miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25944 3' -58.4 NC_005337.1 + 47940 0.66 0.80235
Target:  5'- cGGAGGAgGCCgGCCugacgcuggcgaccgACGGCuUCUUCg -3'
miRNA:   3'- cUUUCCUgCGGgUGG---------------UGCCGcAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 82272 0.66 0.798792
Target:  5'- ---cGGcCGUCCGUCACGGCGUCgUa -3'
miRNA:   3'- cuuuCCuGCGGGUGGUGCCGCAGgAg -5'
25944 3' -58.4 NC_005337.1 + 14823 0.66 0.798792
Target:  5'- -cGAGGACGCCguggugGGCGUCCUUu -3'
miRNA:   3'- cuUUCCUGCGGguggugCCGCAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 105050 0.66 0.798792
Target:  5'- -cAGGcGACGCCCgGCCgcGCGGCGcugcgcagcgCCUCc -3'
miRNA:   3'- cuUUC-CUGCGGG-UGG--UGCCGCa---------GGAG- -5'
25944 3' -58.4 NC_005337.1 + 42392 0.66 0.798792
Target:  5'- ---cGGAgGCgCCGCgGCGcGCGgCCUCg -3'
miRNA:   3'- cuuuCCUgCG-GGUGgUGC-CGCaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 10664 0.66 0.798792
Target:  5'- gGAccGcGCGCCgGCCgGCGGCGgguucUCCUCg -3'
miRNA:   3'- -CUuuCcUGCGGgUGG-UGCCGC-----AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 55555 0.66 0.789794
Target:  5'- ------uCGUCCACCGCGcGCG-CCUCg -3'
miRNA:   3'- cuuuccuGCGGGUGGUGC-CGCaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 77130 0.66 0.789794
Target:  5'- --cGGGugcuGCGCU--CCACGGCGUCCa- -3'
miRNA:   3'- cuuUCC----UGCGGguGGUGCCGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 25032 0.66 0.789794
Target:  5'- -uGAGG-CGCCguCGCCACGGgcccUCCUCg -3'
miRNA:   3'- cuUUCCuGCGG--GUGGUGCCgc--AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 111143 0.66 0.789794
Target:  5'- gGAAGGGGCGCauggCCgcgACCACGGCGg---- -3'
miRNA:   3'- -CUUUCCUGCG----GG---UGGUGCCGCaggag -5'
25944 3' -58.4 NC_005337.1 + 11063 0.66 0.789794
Target:  5'- cAGAGGACgaagcccugGCCCGCCuggcagcucuCGGCGUacacgcgcaCCUCu -3'
miRNA:   3'- cUUUCCUG---------CGGGUGGu---------GCCGCA---------GGAG- -5'
25944 3' -58.4 NC_005337.1 + 29760 0.66 0.789794
Target:  5'- -cGGGGuCGUCCaACCG-GGCGUCCg- -3'
miRNA:   3'- cuUUCCuGCGGG-UGGUgCCGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 42127 0.66 0.788887
Target:  5'- -cGAGGACggcgcugGCCCGCgGCG-CGUCCg- -3'
miRNA:   3'- cuUUCCUG-------CGGGUGgUGCcGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 40562 0.66 0.780656
Target:  5'- uGGAGGcCGCgucgagCCGCCGCGGUucaUCCUCc -3'
miRNA:   3'- cUUUCCuGCG------GGUGGUGCCGc--AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 2016 0.66 0.780656
Target:  5'- --cGGGucuAUGCCCagcucuuugGCCACGGCGauccggUCCUCc -3'
miRNA:   3'- cuuUCC---UGCGGG---------UGGUGCCGC------AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 41618 0.66 0.780656
Target:  5'- cGAAGGAgGCCguggugcgaCGCC-CGGCGUCUcCg -3'
miRNA:   3'- cUUUCCUgCGG---------GUGGuGCCGCAGGaG- -5'
25944 3' -58.4 NC_005337.1 + 34016 0.66 0.780656
Target:  5'- aGGAGGAgCaCCCGCU-CGGCGcCCUCc -3'
miRNA:   3'- cUUUCCU-GcGGGUGGuGCCGCaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 47785 0.66 0.780656
Target:  5'- ---cGGACuccUCCGCCACGcGCaUCCUCa -3'
miRNA:   3'- cuuuCCUGc--GGGUGGUGC-CGcAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 118778 0.66 0.780656
Target:  5'- uAGAuGACGCCgGCgGCGGCGcCgUCg -3'
miRNA:   3'- cUUUcCUGCGGgUGgUGCCGCaGgAG- -5'
25944 3' -58.4 NC_005337.1 + 36206 0.66 0.779735
Target:  5'- --cGGGuucgucguuuuuuGCGCCgGCCGCGGCG-CgCUCc -3'
miRNA:   3'- cuuUCC-------------UGCGGgUGGUGCCGCaG-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.