miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25944 3' -58.4 NC_005337.1 + 42596 0.66 0.768581
Target:  5'- uGAAGGcgucgcggcugcuaGCGCCCGCCAUGuGCGgcaCCg- -3'
miRNA:   3'- cUUUCC--------------UGCGGGUGGUGC-CGCa--GGag -5'
25944 3' -58.4 NC_005337.1 + 130771 0.66 0.752488
Target:  5'- ---uGGACGCCCGCCACaacaaCCUCc -3'
miRNA:   3'- cuuuCCUGCGGGUGGUGccgcaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 126865 0.66 0.761994
Target:  5'- ---cGGACGCCgCugCACcucuGCGUgCUCg -3'
miRNA:   3'- cuuuCCUGCGG-GugGUGc---CGCAgGAG- -5'
25944 3' -58.4 NC_005337.1 + 71484 0.66 0.761994
Target:  5'- ---uGGACGCCaCGCCggacGCGGUGcCCg- -3'
miRNA:   3'- cuuuCCUGCGG-GUGG----UGCCGCaGGag -5'
25944 3' -58.4 NC_005337.1 + 91446 0.66 0.752488
Target:  5'- ---cGG-UGUCCACCuGCGGCGUCUg- -3'
miRNA:   3'- cuuuCCuGCGGGUGG-UGCCGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 77130 0.66 0.789794
Target:  5'- --cGGGugcuGCGCU--CCACGGCGUCCa- -3'
miRNA:   3'- cuuUCC----UGCGGguGGUGCCGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 124039 0.66 0.771387
Target:  5'- cGAAGGccgcGCGCCUGCCGCGGCuGgagcugCCa- -3'
miRNA:   3'- cUUUCC----UGCGGGUGGUGCCG-Ca-----GGag -5'
25944 3' -58.4 NC_005337.1 + 10664 0.66 0.798792
Target:  5'- gGAccGcGCGCCgGCCgGCGGCGgguucUCCUCg -3'
miRNA:   3'- -CUuuCcUGCGGgUGG-UGCCGC-----AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 36394 0.66 0.768581
Target:  5'- ----cGACGagaacuccugcaccUCCACCACGGaGUCCUCg -3'
miRNA:   3'- cuuucCUGC--------------GGGUGGUGCCgCAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 25032 0.66 0.789794
Target:  5'- -uGAGG-CGCCguCGCCACGGgcccUCCUCg -3'
miRNA:   3'- cuUUCCuGCGG--GUGGUGCCgc--AGGAG- -5'
25944 3' -58.4 NC_005337.1 + 85603 0.66 0.752488
Target:  5'- uGAAGGugcUGCUCACggccuucauCACGGCGUCCa- -3'
miRNA:   3'- cUUUCCu--GCGGGUG---------GUGCCGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 42127 0.66 0.788887
Target:  5'- -cGAGGACggcgcugGCCCGCgGCG-CGUCCg- -3'
miRNA:   3'- cuUUCCUG-------CGGGUGgUGCcGCAGGag -5'
25944 3' -58.4 NC_005337.1 + 42392 0.66 0.798792
Target:  5'- ---cGGAgGCgCCGCgGCGcGCGgCCUCg -3'
miRNA:   3'- cuuuCCUgCG-GGUGgUGC-CGCaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 101072 0.66 0.751531
Target:  5'- uGAGAGGcGCGcCCCGCCGuCGGgagggccCGUCCg- -3'
miRNA:   3'- -CUUUCC-UGC-GGGUGGU-GCC-------GCAGGag -5'
25944 3' -58.4 NC_005337.1 + 4200 0.66 0.752488
Target:  5'- --cGGGugGUCCAUUccaGCGGCGUCg-- -3'
miRNA:   3'- cuuUCCugCGGGUGG---UGCCGCAGgag -5'
25944 3' -58.4 NC_005337.1 + 76454 0.66 0.771387
Target:  5'- cGAAGGuguuccacAUGCCCggcACCACGuucaCGUCCUCg -3'
miRNA:   3'- cUUUCC--------UGCGGG---UGGUGCc---GCAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 25387 0.66 0.752488
Target:  5'- -uAAGGGCG-CCGCgGUGGCGgCCUCg -3'
miRNA:   3'- cuUUCCUGCgGGUGgUGCCGCaGGAG- -5'
25944 3' -58.4 NC_005337.1 + 115414 0.66 0.761994
Target:  5'- -cGAGGACGCCguCuCGcCGGCcGUCCg- -3'
miRNA:   3'- cuUUCCUGCGGguG-GU-GCCG-CAGGag -5'
25944 3' -58.4 NC_005337.1 + 47940 0.66 0.80235
Target:  5'- cGGAGGAgGCCgGCCugacgcuggcgaccgACGGCuUCUUCg -3'
miRNA:   3'- cUUUCCUgCGGgUGG---------------UGCCGcAGGAG- -5'
25944 3' -58.4 NC_005337.1 + 55555 0.66 0.789794
Target:  5'- ------uCGUCCACCGCGcGCG-CCUCg -3'
miRNA:   3'- cuuuccuGCGGGUGGUGC-CGCaGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.