miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25944 5' -55.4 NC_005337.1 + 50451 0.66 0.901996
Target:  5'- -cGGGCGGCGCguguuguccuggCGCGCCCgacGGguGGCGg -3'
miRNA:   3'- cuCUUGUUGUG------------GCGCGGG---UCguCUGU- -5'
25944 5' -55.4 NC_005337.1 + 115162 0.66 0.901996
Target:  5'- uGGA--GAUGCCgGCGCCC-GCGGACGc -3'
miRNA:   3'- cUCUugUUGUGG-CGCGGGuCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 82541 0.66 0.901996
Target:  5'- uGAGGauGCAGCGCCGCaaguugguGUgCAGCAcGGCGc -3'
miRNA:   3'- -CUCU--UGUUGUGGCG--------CGgGUCGU-CUGU- -5'
25944 5' -55.4 NC_005337.1 + 105021 0.66 0.901996
Target:  5'- cGAGuuGCGGCugcgaguuCUGCGaCCGGCAGGCGa -3'
miRNA:   3'- -CUCu-UGUUGu-------GGCGCgGGUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 3586 0.66 0.901996
Target:  5'- cGGGGACuugAGCAgCGCcCCCAGCGG-CGu -3'
miRNA:   3'- -CUCUUG---UUGUgGCGcGGGUCGUCuGU- -5'
25944 5' -55.4 NC_005337.1 + 65866 0.66 0.901996
Target:  5'- cGGGGCGcgcgcuaccacGCACgCGCGCagGGCGGACGu -3'
miRNA:   3'- cUCUUGU-----------UGUG-GCGCGggUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 95465 0.66 0.901996
Target:  5'- gGAGAACucguGgAUCGCGUCCAGuCGGuCGa -3'
miRNA:   3'- -CUCUUGu---UgUGGCGCGGGUC-GUCuGU- -5'
25944 5' -55.4 NC_005337.1 + 65209 0.66 0.901996
Target:  5'- cAGGACGccggGCACCGCGUCCAGg----- -3'
miRNA:   3'- cUCUUGU----UGUGGCGCGGGUCgucugu -5'
25944 5' -55.4 NC_005337.1 + 69573 0.66 0.901996
Target:  5'- gGAGGugGCAgaggcACACCGCgacGUCCAGgGGACu -3'
miRNA:   3'- -CUCU--UGU-----UGUGGCG---CGGGUCgUCUGu -5'
25944 5' -55.4 NC_005337.1 + 53007 0.66 0.901996
Target:  5'- -cGGAC-ACGCC-CGCCCGGCugcGGCu -3'
miRNA:   3'- cuCUUGuUGUGGcGCGGGUCGu--CUGu -5'
25944 5' -55.4 NC_005337.1 + 121939 0.66 0.901996
Target:  5'- -cGGACGGCGCUGCaccaCCAcGCGGACu -3'
miRNA:   3'- cuCUUGUUGUGGCGcg--GGU-CGUCUGu -5'
25944 5' -55.4 NC_005337.1 + 25006 0.66 0.901996
Target:  5'- -uGGACAGCuuccACCgcuucgacguGCGCgCGGCGGACAc -3'
miRNA:   3'- cuCUUGUUG----UGG----------CGCGgGUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 122343 0.66 0.901996
Target:  5'- --cGACGGCG-CGCGCCCGGguGccGCAu -3'
miRNA:   3'- cucUUGUUGUgGCGCGGGUCguC--UGU- -5'
25944 5' -55.4 NC_005337.1 + 10765 0.66 0.901996
Target:  5'- -cGAGCuccGCACCG-GCCaucgucaGGCGGACGa -3'
miRNA:   3'- cuCUUGu--UGUGGCgCGGg------UCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 63091 0.66 0.901996
Target:  5'- gGAGAuCGACgggccccgugccACCGaGCCCAGCGacGACAu -3'
miRNA:   3'- -CUCUuGUUG------------UGGCgCGGGUCGU--CUGU- -5'
25944 5' -55.4 NC_005337.1 + 48883 0.66 0.901347
Target:  5'- -cGGAgAGCGCCGCGCaCGGCuccagugcaucucGGACGu -3'
miRNA:   3'- cuCUUgUUGUGGCGCGgGUCG-------------UCUGU- -5'
25944 5' -55.4 NC_005337.1 + 15328 0.66 0.895396
Target:  5'- uGGAAUAucgcgcgacgcACGCUGCGCCC-GCGcGACGc -3'
miRNA:   3'- cUCUUGU-----------UGUGGCGCGGGuCGU-CUGU- -5'
25944 5' -55.4 NC_005337.1 + 129777 0.66 0.895396
Target:  5'- cGGGAAC-ACGCCGCuGCaCguGCuGGCGa -3'
miRNA:   3'- -CUCUUGuUGUGGCG-CG-GguCGuCUGU- -5'
25944 5' -55.4 NC_005337.1 + 95364 0.66 0.895396
Target:  5'- gGGGAGCcgucGAUGCCGacgaaGCCCAGC-GACc -3'
miRNA:   3'- -CUCUUG----UUGUGGCg----CGGGUCGuCUGu -5'
25944 5' -55.4 NC_005337.1 + 109908 0.66 0.895396
Target:  5'- -cGGAC-ACAgCGCGgagaacuccUCCAGCAGGCAc -3'
miRNA:   3'- cuCUUGuUGUgGCGC---------GGGUCGUCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.