miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25944 5' -55.4 NC_005337.1 + 119485 1.08 0.00273
Target:  5'- cGAGAACAACACCGCGCCCAGCAGACAc -3'
miRNA:   3'- -CUCUUGUUGUGGCGCGGGUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 34984 0.84 0.126206
Target:  5'- cGGAACGccGCGCCGCGCCaGGCAGACGg -3'
miRNA:   3'- cUCUUGU--UGUGGCGCGGgUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 29972 0.8 0.217486
Target:  5'- cAGAGCGcCGCCGCGCCCucGCGGACc -3'
miRNA:   3'- cUCUUGUuGUGGCGCGGGu-CGUCUGu -5'
25944 5' -55.4 NC_005337.1 + 50885 0.79 0.228645
Target:  5'- cGAGGACAugguuuggcggGCGCgCGCGCCCAGCGGcCGg -3'
miRNA:   3'- -CUCUUGU-----------UGUG-GCGCGGGUCGUCuGU- -5'
25944 5' -55.4 NC_005337.1 + 25048 0.79 0.246288
Target:  5'- aGGAGCuGCugCGCGCCguGCGGGCGg -3'
miRNA:   3'- cUCUUGuUGugGCGCGGguCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 62776 0.77 0.335902
Target:  5'- uGGAACGcgaagucggGCACCGCGUCCGGCGuGGCGu -3'
miRNA:   3'- cUCUUGU---------UGUGGCGCGGGUCGU-CUGU- -5'
25944 5' -55.4 NC_005337.1 + 5953 0.76 0.343703
Target:  5'- -cGAGCAgucgcgcucGCGCCGCGCgCgAGCAGACGg -3'
miRNA:   3'- cuCUUGU---------UGUGGCGCG-GgUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 19588 0.75 0.410698
Target:  5'- cGAGGAUcucCACUGCGUCCAGCGGAgAg -3'
miRNA:   3'- -CUCUUGuu-GUGGCGCGGGUCGUCUgU- -5'
25944 5' -55.4 NC_005337.1 + 58349 0.75 0.419626
Target:  5'- cGAGAcCGugGCCGCGCUCuucGCGGACu -3'
miRNA:   3'- -CUCUuGUugUGGCGCGGGu--CGUCUGu -5'
25944 5' -55.4 NC_005337.1 + 70586 0.74 0.447098
Target:  5'- aGGAACAGCGcCCGCGCCCccauGCcgAGGCGc -3'
miRNA:   3'- cUCUUGUUGU-GGCGCGGGu---CG--UCUGU- -5'
25944 5' -55.4 NC_005337.1 + 54842 0.74 0.447098
Target:  5'- aAGAACAuGCACgCGCGCCCGGCGuuCAu -3'
miRNA:   3'- cUCUUGU-UGUG-GCGCGGGUCGUcuGU- -5'
25944 5' -55.4 NC_005337.1 + 127475 0.74 0.447098
Target:  5'- -uGGACAGCgGCUGCGaUCCGGCGGGCAu -3'
miRNA:   3'- cuCUUGUUG-UGGCGC-GGGUCGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 87472 0.74 0.485223
Target:  5'- --aGACGACGCuCGCGCUCAGCGGGa- -3'
miRNA:   3'- cucUUGUUGUG-GCGCGGGUCGUCUgu -5'
25944 5' -55.4 NC_005337.1 + 130585 0.73 0.494996
Target:  5'- cGAGGACAAgaaGCCGCGUCgGGCGcGACGc -3'
miRNA:   3'- -CUCUUGUUg--UGGCGCGGgUCGU-CUGU- -5'
25944 5' -55.4 NC_005337.1 + 110316 0.73 0.504858
Target:  5'- uGAGGGC-GCGCCGUucgGCCCGGcCGGGCGg -3'
miRNA:   3'- -CUCUUGuUGUGGCG---CGGGUC-GUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 111420 0.73 0.514804
Target:  5'- cGAGAGC-GCGCCGCgGUCCAGCAcGAg- -3'
miRNA:   3'- -CUCUUGuUGUGGCG-CGGGUCGU-CUgu -5'
25944 5' -55.4 NC_005337.1 + 42165 0.73 0.514804
Target:  5'- aAGAGCAccgacucggACACCGCGUCCAGCuGcGCGu -3'
miRNA:   3'- cUCUUGU---------UGUGGCGCGGGUCGuC-UGU- -5'
25944 5' -55.4 NC_005337.1 + 111317 0.73 0.514804
Target:  5'- cGAGGACGAgcccCAgCGUGCCCAGCuuGGCGu -3'
miRNA:   3'- -CUCUUGUU----GUgGCGCGGGUCGu-CUGU- -5'
25944 5' -55.4 NC_005337.1 + 102395 0.73 0.524829
Target:  5'- gGAGAGCGcgaAgACCGUGCCCA-CGGGCGg -3'
miRNA:   3'- -CUCUUGU---UgUGGCGCGGGUcGUCUGU- -5'
25944 5' -55.4 NC_005337.1 + 17924 0.73 0.53189
Target:  5'- uGAGGACGcgggucauggcccgGCGCUGCGCCCgcAGCAGccGCAc -3'
miRNA:   3'- -CUCUUGU--------------UGUGGCGCGGG--UCGUC--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.