miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25945 3' -60.9 NC_005337.1 + 105038 0.66 0.699893
Target:  5'- uUCUGCGaCCGGcaGGCGaCGCCCGg--- -3'
miRNA:   3'- -AGACGCaGGCC--CCGUaGCGGGUgcac -5'
25945 3' -60.9 NC_005337.1 + 99633 0.66 0.684181
Target:  5'- --cGCGUgCGGgacacggacgugcgcGGCAUCGCCgCGCGg- -3'
miRNA:   3'- agaCGCAgGCC---------------CCGUAGCGG-GUGCac -5'
25945 3' -60.9 NC_005337.1 + 124410 0.66 0.680236
Target:  5'- gUCUGCGcgagauggUCCuGGGCAaCGCCgCGCGc- -3'
miRNA:   3'- -AGACGC--------AGGcCCCGUaGCGG-GUGCac -5'
25945 3' -60.9 NC_005337.1 + 31366 0.66 0.670347
Target:  5'- cCUGC--UCGGGGUAgaaGCCCACGcUGc -3'
miRNA:   3'- aGACGcaGGCCCCGUag-CGGGUGC-AC- -5'
25945 3' -60.9 NC_005337.1 + 127484 0.66 0.640535
Target:  5'- gCUGCGaUCCGgcGGGCAUCGacaCCgGCGg- -3'
miRNA:   3'- aGACGC-AGGC--CCCGUAGC---GGgUGCac -5'
25945 3' -60.9 NC_005337.1 + 86110 0.67 0.630575
Target:  5'- cUCcGgGUCCcagcacucgcGGGGC-UCGUCCACGUa -3'
miRNA:   3'- -AGaCgCAGG----------CCCCGuAGCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 115038 0.67 0.630575
Target:  5'- cUCUGCcccugCCaGGGCAUgGCCguCGUGc -3'
miRNA:   3'- -AGACGca---GGcCCCGUAgCGGguGCAC- -5'
25945 3' -60.9 NC_005337.1 + 86671 0.67 0.630575
Target:  5'- --cGCGgCCGcgcgcgcGGCGUCGCCCACGc- -3'
miRNA:   3'- agaCGCaGGCc------CCGUAGCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 95073 0.67 0.620616
Target:  5'- --cGgGUCCGGGuccGCGUaGCCCGCGg- -3'
miRNA:   3'- agaCgCAGGCCC---CGUAgCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 6024 0.67 0.61763
Target:  5'- --gGCGUCCGcccagaguugucgcGGGCGUggauguccgCGCCCGCGg- -3'
miRNA:   3'- agaCGCAGGC--------------CCCGUA---------GCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 107535 0.67 0.614645
Target:  5'- uUCgcgGCGaCCGGagcaccgacaaggacGGCAacgccgcggucuUCGCCCGCGUGc -3'
miRNA:   3'- -AGa--CGCaGGCC---------------CCGU------------AGCGGGUGCAC- -5'
25945 3' -60.9 NC_005337.1 + 122873 0.67 0.600731
Target:  5'- cCUGCGgaacCCGGGGCccuggcgcAUCaGCCCGCc-- -3'
miRNA:   3'- aGACGCa---GGCCCCG--------UAG-CGGGUGcac -5'
25945 3' -60.9 NC_005337.1 + 88354 0.67 0.600731
Target:  5'- cUCUGCGacuUCCugguccaaaGGGGgA-CGCCCACGUc -3'
miRNA:   3'- -AGACGC---AGG---------CCCCgUaGCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 95625 0.67 0.590817
Target:  5'- --gGCGUCCGuGGGCGcggGCCCGCu-- -3'
miRNA:   3'- agaCGCAGGC-CCCGUag-CGGGUGcac -5'
25945 3' -60.9 NC_005337.1 + 131882 0.67 0.590817
Target:  5'- gCUGCcUCCuGGaGGCGggCGCgCACGUGg -3'
miRNA:   3'- aGACGcAGG-CC-CCGUa-GCGgGUGCAC- -5'
25945 3' -60.9 NC_005337.1 + 19599 0.67 0.590817
Target:  5'- aCUGCGUCCagcggagaGGcGGCcUCgagGCCCGCGUu -3'
miRNA:   3'- aGACGCAGG--------CC-CCGuAG---CGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 19279 0.68 0.5701
Target:  5'- gCUGCGUgUGGaGCGUaggacuauaucgcCGCCCACGUa -3'
miRNA:   3'- aGACGCAgGCCcCGUA-------------GCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 80411 0.68 0.561273
Target:  5'- gUCUGC-UCgCGGuGGCGUCGCUgGuCGUGc -3'
miRNA:   3'- -AGACGcAG-GCC-CCGUAGCGGgU-GCAC- -5'
25945 3' -60.9 NC_005337.1 + 60957 0.68 0.551511
Target:  5'- -aUGCGcaUGGGGCGcgCGCCCACGc- -3'
miRNA:   3'- agACGCagGCCCCGUa-GCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 50218 0.68 0.551511
Target:  5'- cCUGCGccuccCCGaGGGCGUCGUgCGCGc- -3'
miRNA:   3'- aGACGCa----GGC-CCCGUAGCGgGUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.