miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25945 3' -60.9 NC_005337.1 + 6024 0.67 0.61763
Target:  5'- --gGCGUCCGcccagaguugucgcGGGCGUggauguccgCGCCCGCGg- -3'
miRNA:   3'- agaCGCAGGC--------------CCCGUA---------GCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 13776 0.69 0.465678
Target:  5'- --aGCGcCCGaacuugaGGGCGUCGCCggaCACGUGg -3'
miRNA:   3'- agaCGCaGGC-------CCCGUAGCGG---GUGCAC- -5'
25945 3' -60.9 NC_005337.1 + 19279 0.68 0.5701
Target:  5'- gCUGCGUgUGGaGCGUaggacuauaucgcCGCCCACGUa -3'
miRNA:   3'- aGACGCAgGCCcCGUA-------------GCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 19599 0.67 0.590817
Target:  5'- aCUGCGUCCagcggagaGGcGGCcUCgagGCCCGCGUu -3'
miRNA:   3'- aGACGCAGG--------CC-CCGuAG---CGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 21399 0.7 0.413874
Target:  5'- cUCgGCGgCCGcGGCAUCGUCgACGUGg -3'
miRNA:   3'- -AGaCGCaGGCcCCGUAGCGGgUGCAC- -5'
25945 3' -60.9 NC_005337.1 + 31366 0.66 0.670347
Target:  5'- cCUGC--UCGGGGUAgaaGCCCACGcUGc -3'
miRNA:   3'- aGACGcaGGCCCCGUag-CGGGUGC-AC- -5'
25945 3' -60.9 NC_005337.1 + 45194 0.68 0.5418
Target:  5'- --cGUGcCCGGGGCgcuGUCGCUCAUGa- -3'
miRNA:   3'- agaCGCaGGCCCCG---UAGCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 50218 0.68 0.551511
Target:  5'- cCUGCGccuccCCGaGGGCGUCGUgCGCGc- -3'
miRNA:   3'- aGACGCa----GGC-CCCGUAGCGgGUGCac -5'
25945 3' -60.9 NC_005337.1 + 57199 0.7 0.413874
Target:  5'- cUCgGCGUaCGGGuGCcgCGCCCGCGa- -3'
miRNA:   3'- -AGaCGCAgGCCC-CGuaGCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 60957 0.68 0.551511
Target:  5'- -aUGCGcaUGGGGCGcgCGCCCACGc- -3'
miRNA:   3'- agACGCagGCCCCGUa-GCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 66190 0.68 0.522558
Target:  5'- --cGCGUCCGGGGCGacggggagcUCGUgcguuccuCCGCGg- -3'
miRNA:   3'- agaCGCAGGCCCCGU---------AGCG--------GGUGCac -5'
25945 3' -60.9 NC_005337.1 + 68286 0.69 0.466585
Target:  5'- gUCUGCGgccggCCGGcGGCGUgGaCgCGCGUGc -3'
miRNA:   3'- -AGACGCa----GGCC-CCGUAgC-GgGUGCAC- -5'
25945 3' -60.9 NC_005337.1 + 80411 0.68 0.561273
Target:  5'- gUCUGC-UCgCGGuGGCGUCGCUgGuCGUGc -3'
miRNA:   3'- -AGACGcAG-GCC-CCGUAGCGGgU-GCAC- -5'
25945 3' -60.9 NC_005337.1 + 86110 0.67 0.630575
Target:  5'- cUCcGgGUCCcagcacucgcGGGGC-UCGUCCACGUa -3'
miRNA:   3'- -AGaCgCAGG----------CCCCGuAGCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 86410 0.69 0.503584
Target:  5'- gUCUGCGUCC---GCcgCGCCCgACGUGc -3'
miRNA:   3'- -AGACGCAGGcccCGuaGCGGG-UGCAC- -5'
25945 3' -60.9 NC_005337.1 + 86671 0.67 0.630575
Target:  5'- --cGCGgCCGcgcgcgcGGCGUCGCCCACGc- -3'
miRNA:   3'- agaCGCaGGCc------CCGUAGCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 88354 0.67 0.600731
Target:  5'- cUCUGCGacuUCCugguccaaaGGGGgA-CGCCCACGUc -3'
miRNA:   3'- -AGACGC---AGG---------CCCCgUaGCGGGUGCAc -5'
25945 3' -60.9 NC_005337.1 + 89912 0.68 0.522558
Target:  5'- --gGCGg-CGGGGCGUCGcCCCACu-- -3'
miRNA:   3'- agaCGCagGCCCCGUAGC-GGGUGcac -5'
25945 3' -60.9 NC_005337.1 + 95073 0.67 0.620616
Target:  5'- --cGgGUCCGGGuccGCGUaGCCCGCGg- -3'
miRNA:   3'- agaCgCAGGCCC---CGUAgCGGGUGCac -5'
25945 3' -60.9 NC_005337.1 + 95625 0.67 0.590817
Target:  5'- --gGCGUCCGuGGGCGcggGCCCGCu-- -3'
miRNA:   3'- agaCGCAGGC-CCCGUag-CGGGUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.