miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25945 5' -55.2 NC_005337.1 + 98397 0.66 0.899788
Target:  5'- gUCAAGgaCGGGUucaugGCggggacCACCAUGGAg -3'
miRNA:   3'- gAGUUCaaGCCCG-----CGac----GUGGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 83328 0.66 0.899788
Target:  5'- -cUAGGggCGcGGCGCgagGCGCCccGGGa -3'
miRNA:   3'- gaGUUCaaGC-CCGCGa--CGUGGuaCCU- -5'
25945 5' -55.2 NC_005337.1 + 82616 0.66 0.899788
Target:  5'- -cCAGGggcgacggCGGGCGCUGgCgACCGcGGAg -3'
miRNA:   3'- gaGUUCaa------GCCCGCGAC-G-UGGUaCCU- -5'
25945 5' -55.2 NC_005337.1 + 67079 0.66 0.893126
Target:  5'- -cCAGGUgauguacuUCGGGCGCUuCAaccUCGUGGAc -3'
miRNA:   3'- gaGUUCA--------AGCCCGCGAcGU---GGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 43651 0.66 0.893126
Target:  5'- aUCAAGgaaCGGGUGaacagGCACCG-GGAa -3'
miRNA:   3'- gAGUUCaa-GCCCGCga---CGUGGUaCCU- -5'
25945 5' -55.2 NC_005337.1 + 117152 0.66 0.893126
Target:  5'- -aCAAGgcgCGGGCGCgcauggagacGCuccucgcguucGCCAUGGAa -3'
miRNA:   3'- gaGUUCaa-GCCCGCGa---------CG-----------UGGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 102843 0.66 0.893126
Target:  5'- gUCAuggUCGGGcCGC-GCGCCA-GGAa -3'
miRNA:   3'- gAGUucaAGCCC-GCGaCGUGGUaCCU- -5'
25945 5' -55.2 NC_005337.1 + 124314 0.66 0.886226
Target:  5'- cCUCcg--UCGcGGCGCagGCGCuCAUGGAc -3'
miRNA:   3'- -GAGuucaAGC-CCGCGa-CGUG-GUACCU- -5'
25945 5' -55.2 NC_005337.1 + 132461 0.66 0.885523
Target:  5'- -aCGuGUUCGGGaacacgcCGCUGCAcuCCAUGGc -3'
miRNA:   3'- gaGUuCAAGCCC-------GCGACGU--GGUACCu -5'
25945 5' -55.2 NC_005337.1 + 93302 0.67 0.87173
Target:  5'- -gCGGGacugCGuGGCGCUGUACCcgGGc -3'
miRNA:   3'- gaGUUCaa--GC-CCGCGACGUGGuaCCu -5'
25945 5' -55.2 NC_005337.1 + 104479 0.67 0.870981
Target:  5'- aUCGAGUUCGcgcGGCGCUgcuacgcgcucgcGCACCc-GGAc -3'
miRNA:   3'- gAGUUCAAGC---CCGCGA-------------CGUGGuaCCU- -5'
25945 5' -55.2 NC_005337.1 + 121564 0.67 0.864144
Target:  5'- cCUCGAGcgCGGcGCGCgcgcgGaCGCCAccgGGAa -3'
miRNA:   3'- -GAGUUCaaGCC-CGCGa----C-GUGGUa--CCU- -5'
25945 5' -55.2 NC_005337.1 + 17402 0.67 0.864144
Target:  5'- -cCAGGUUgaugaggaaCGGGCGCgcguucgucUGCACCAUGu- -3'
miRNA:   3'- gaGUUCAA---------GCCCGCG---------ACGUGGUACcu -5'
25945 5' -55.2 NC_005337.1 + 130732 0.67 0.863373
Target:  5'- gUCGAGcgcUCGuGGcCGCuggguccgacgugUGCACCGUGGAc -3'
miRNA:   3'- gAGUUCa--AGC-CC-GCG-------------ACGUGGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 131084 0.67 0.85634
Target:  5'- -gCGAGUUCGuggucugcGCGCUG-GCCAUGGGg -3'
miRNA:   3'- gaGUUCAAGCc-------CGCGACgUGGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 123619 0.67 0.840108
Target:  5'- gCUCg----CGGGUGCUGaCGCuCGUGGAg -3'
miRNA:   3'- -GAGuucaaGCCCGCGAC-GUG-GUACCU- -5'
25945 5' -55.2 NC_005337.1 + 47321 0.68 0.831692
Target:  5'- gUCAuGUUCGaGGCGC-GCGuggUCAUGGAc -3'
miRNA:   3'- gAGUuCAAGC-CCGCGaCGU---GGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 127577 0.68 0.831692
Target:  5'- gCUgGAGg-CGGGCGCa--GCCGUGGAc -3'
miRNA:   3'- -GAgUUCaaGCCCGCGacgUGGUACCU- -5'
25945 5' -55.2 NC_005337.1 + 99581 0.68 0.814304
Target:  5'- gCUCGugcGGcgcUUCGGGCGggaCUGCGCCGUGa- -3'
miRNA:   3'- -GAGU---UC---AAGCCCGC---GACGUGGUACcu -5'
25945 5' -55.2 NC_005337.1 + 124230 0.68 0.805347
Target:  5'- -gCGAGUUCuGGgGCgGCGCCugcGUGGAg -3'
miRNA:   3'- gaGUUCAAGcCCgCGaCGUGG---UACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.