miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25946 3' -55.5 NC_005337.1 + 40792 0.66 0.881941
Target:  5'- cUGGAGGUccacgGGACCaugggcgacgugUGCgaggaccUGCUGGGCg -3'
miRNA:   3'- -ACCUCCAcua--UCUGG------------ACG-------ACGACCUG- -5'
25946 3' -55.5 NC_005337.1 + 128233 0.66 0.875362
Target:  5'- aGGAGcUGAUGGGgCUGCgcacggcccUGCUGG-Cg -3'
miRNA:   3'- aCCUCcACUAUCUgGACG---------ACGACCuG- -5'
25946 3' -55.5 NC_005337.1 + 82683 0.66 0.860086
Target:  5'- gUGGuuGUGGUGGAgCUGCUGCa---- -3'
miRNA:   3'- -ACCucCACUAUCUgGACGACGaccug -5'
25946 3' -55.5 NC_005337.1 + 107936 0.67 0.843942
Target:  5'- aGGGcccGcUGAUGcGgCUGCUGCUGGACa -3'
miRNA:   3'- aCCU---CcACUAUcUgGACGACGACCUG- -5'
25946 3' -55.5 NC_005337.1 + 2791 0.67 0.842282
Target:  5'- cGGAccGGUGccgcaugugcacUAGGCgCUGCUGCaGGACg -3'
miRNA:   3'- aCCU--CCACu-----------AUCUG-GACGACGaCCUG- -5'
25946 3' -55.5 NC_005337.1 + 84129 0.67 0.835563
Target:  5'- aGGAGGacuUGA---GCC-GCUGCUGGAa -3'
miRNA:   3'- aCCUCC---ACUaucUGGaCGACGACCUg -5'
25946 3' -55.5 NC_005337.1 + 38502 0.67 0.826988
Target:  5'- aGGAGGUGGccgcccgGGcgcGCCUGgUGCaGGGCc -3'
miRNA:   3'- aCCUCCACUa------UC---UGGACgACGaCCUG- -5'
25946 3' -55.5 NC_005337.1 + 48951 0.67 0.826988
Target:  5'- aGGcGGUGAUGGACgUGCUGgCcaaGGCg -3'
miRNA:   3'- aCCuCCACUAUCUGgACGAC-Gac-CUG- -5'
25946 3' -55.5 NC_005337.1 + 116321 0.68 0.800178
Target:  5'- aUGGAgcGGUGc--GugCUGCUGC-GGGCg -3'
miRNA:   3'- -ACCU--CCACuauCugGACGACGaCCUG- -5'
25946 3' -55.5 NC_005337.1 + 38315 0.68 0.800178
Target:  5'- gUGGAGGUGAUcGACaCgccgGC-GCcGGGCg -3'
miRNA:   3'- -ACCUCCACUAuCUG-Ga---CGaCGaCCUG- -5'
25946 3' -55.5 NC_005337.1 + 72647 0.68 0.785275
Target:  5'- aUGGcGGUGcUGGGCCcGCUGaaccuggucaacaacCUGGACg -3'
miRNA:   3'- -ACCuCCACuAUCUGGaCGAC---------------GACCUG- -5'
25946 3' -55.5 NC_005337.1 + 83353 0.68 0.771928
Target:  5'- gGGAGGccgacUGGcugcGGACCgGCcGCUGGGCg -3'
miRNA:   3'- aCCUCC-----ACUa---UCUGGaCGaCGACCUG- -5'
25946 3' -55.5 NC_005337.1 + 130517 0.68 0.771928
Target:  5'- gGGAGGUcAUGGAguuCCUGgUGCgcgcGGGCg -3'
miRNA:   3'- aCCUCCAcUAUCU---GGACgACGa---CCUG- -5'
25946 3' -55.5 NC_005337.1 + 121666 0.69 0.752421
Target:  5'- -cGAGGUcGUGGACCUGCUcauccGCgcGGGCg -3'
miRNA:   3'- acCUCCAcUAUCUGGACGA-----CGa-CCUG- -5'
25946 3' -55.5 NC_005337.1 + 42850 0.69 0.701876
Target:  5'- gUGGuGGUGAcGGacGCCUGCgugacgaaggUGCUGGAg -3'
miRNA:   3'- -ACCuCCACUaUC--UGGACG----------ACGACCUg -5'
25946 3' -55.5 NC_005337.1 + 17429 0.69 0.701876
Target:  5'- cUGGAGGUGAUGGaguGCUUGC-GCUGu-- -3'
miRNA:   3'- -ACCUCCACUAUC---UGGACGaCGACcug -5'
25946 3' -55.5 NC_005337.1 + 122491 0.69 0.700845
Target:  5'- aUGGcgaccguccgucuGGGUGAcccggAGACCUcGCUGCUGGcCc -3'
miRNA:   3'- -ACC-------------UCCACUa----UCUGGA-CGACGACCuG- -5'
25946 3' -55.5 NC_005337.1 + 10737 0.7 0.670725
Target:  5'- cGGAGGaUGucgAGGaagggGCUGCUGGACu -3'
miRNA:   3'- aCCUCC-ACua-UCUgga--CGACGACCUG- -5'
25946 3' -55.5 NC_005337.1 + 96318 0.7 0.639276
Target:  5'- gGGaAGGUGAccuGCCUcccgcuggcggcGCUGCUGGACu -3'
miRNA:   3'- aCC-UCCACUaucUGGA------------CGACGACCUG- -5'
25946 3' -55.5 NC_005337.1 + 28766 0.71 0.586852
Target:  5'- cUGGAGGaaacGAUagccaccgccaAGACCUGCUGCgaGGAg -3'
miRNA:   3'- -ACCUCCa---CUA-----------UCUGGACGACGa-CCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.