Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25946 | 3' | -55.5 | NC_005337.1 | + | 121439 | 1.1 | 0.001848 |
Target: 5'- gUGGAGGUGAUAGACCUGCUGCUGGACg -3' miRNA: 3'- -ACCUCCACUAUCUGGACGACGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 121922 | 0.75 | 0.393032 |
Target: 5'- aGGAGGaGAUGGACgaGCUGUUGGu- -3' miRNA: 3'- aCCUCCaCUAUCUGgaCGACGACCug -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 121769 | 0.74 | 0.437814 |
Target: 5'- cGGAGGUcacgcGgCUGCUGCUGGACg -3' miRNA: 3'- aCCUCCAcuaucUgGACGACGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 24626 | 0.74 | 0.447117 |
Target: 5'- cGGAGGUGAcGGAaaaGCUGgUGGACg -3' miRNA: 3'- aCCUCCACUaUCUggaCGACgACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 99014 | 0.72 | 0.545481 |
Target: 5'- -cGAGGUGcgcgcGGCCUGCgaggcGCUGGACg -3' miRNA: 3'- acCUCCACuau--CUGGACGa----CGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 28766 | 0.71 | 0.586852 |
Target: 5'- cUGGAGGaaacGAUagccaccgccaAGACCUGCUGCgaGGAg -3' miRNA: 3'- -ACCUCCa---CUA-----------UCUGGACGACGa-CCUg -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 96318 | 0.7 | 0.639276 |
Target: 5'- gGGaAGGUGAccuGCCUcccgcuggcggcGCUGCUGGACu -3' miRNA: 3'- aCC-UCCACUaucUGGA------------CGACGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 10737 | 0.7 | 0.670725 |
Target: 5'- cGGAGGaUGucgAGGaagggGCUGCUGGACu -3' miRNA: 3'- aCCUCC-ACua-UCUgga--CGACGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 122491 | 0.69 | 0.700845 |
Target: 5'- aUGGcgaccguccgucuGGGUGAcccggAGACCUcGCUGCUGGcCc -3' miRNA: 3'- -ACC-------------UCCACUa----UCUGGA-CGACGACCuG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 17429 | 0.69 | 0.701876 |
Target: 5'- cUGGAGGUGAUGGaguGCUUGC-GCUGu-- -3' miRNA: 3'- -ACCUCCACUAUC---UGGACGaCGACcug -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 42850 | 0.69 | 0.701876 |
Target: 5'- gUGGuGGUGAcGGacGCCUGCgugacgaaggUGCUGGAg -3' miRNA: 3'- -ACCuCCACUaUC--UGGACG----------ACGACCUg -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 121666 | 0.69 | 0.752421 |
Target: 5'- -cGAGGUcGUGGACCUGCUcauccGCgcGGGCg -3' miRNA: 3'- acCUCCAcUAUCUGGACGA-----CGa-CCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 130517 | 0.68 | 0.771928 |
Target: 5'- gGGAGGUcAUGGAguuCCUGgUGCgcgcGGGCg -3' miRNA: 3'- aCCUCCAcUAUCU---GGACgACGa---CCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 83353 | 0.68 | 0.771928 |
Target: 5'- gGGAGGccgacUGGcugcGGACCgGCcGCUGGGCg -3' miRNA: 3'- aCCUCC-----ACUa---UCUGGaCGaCGACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 72647 | 0.68 | 0.785275 |
Target: 5'- aUGGcGGUGcUGGGCCcGCUGaaccuggucaacaacCUGGACg -3' miRNA: 3'- -ACCuCCACuAUCUGGaCGAC---------------GACCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 38315 | 0.68 | 0.800178 |
Target: 5'- gUGGAGGUGAUcGACaCgccgGC-GCcGGGCg -3' miRNA: 3'- -ACCUCCACUAuCUG-Ga---CGaCGaCCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 116321 | 0.68 | 0.800178 |
Target: 5'- aUGGAgcGGUGc--GugCUGCUGC-GGGCg -3' miRNA: 3'- -ACCU--CCACuauCugGACGACGaCCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 38502 | 0.67 | 0.826988 |
Target: 5'- aGGAGGUGGccgcccgGGcgcGCCUGgUGCaGGGCc -3' miRNA: 3'- aCCUCCACUa------UC---UGGACgACGaCCUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 48951 | 0.67 | 0.826988 |
Target: 5'- aGGcGGUGAUGGACgUGCUGgCcaaGGCg -3' miRNA: 3'- aCCuCCACUAUCUGgACGAC-Gac-CUG- -5' |
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25946 | 3' | -55.5 | NC_005337.1 | + | 84129 | 0.67 | 0.835563 |
Target: 5'- aGGAGGacuUGA---GCC-GCUGCUGGAa -3' miRNA: 3'- aCCUCC---ACUaucUGGaCGACGACCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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