Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25946 | 5' | -53.6 | NC_005337.1 | + | 57671 | 0.66 | 0.964093 |
Target: 5'- aGGcgCUCAucgaGCAGCCGuGGACcUCcaccaugaUGCa -3' miRNA: 3'- -CCuaGAGU----UGUCGGC-CCUGuAG--------ACGc -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 110049 | 0.66 | 0.964093 |
Target: 5'- aGGGUCcgcgUAGCGGUaCGGGG-AUCUGCa -3' miRNA: 3'- -CCUAGa---GUUGUCG-GCCCUgUAGACGc -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 64775 | 0.66 | 0.964093 |
Target: 5'- aGGAUCUCGACGaaCCGGGGguccuCcgCgcgGCGg -3' miRNA: 3'- -CCUAGAGUUGUc-GGCCCU-----GuaGa--CGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 67459 | 0.66 | 0.96059 |
Target: 5'- uGAUC-CGgcGCAGCCGccgcuucgucgaGGGCGUCUcGCGg -3' miRNA: 3'- cCUAGaGU--UGUCGGC------------CCUGUAGA-CGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 129885 | 0.66 | 0.9553 |
Target: 5'- cGGcAUCUCGccgcugcacaugGCGGCCGGGuACAacaacaccgccgcCUGCGa -3' miRNA: 3'- -CC-UAGAGU------------UGUCGGCCC-UGUa------------GACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 103405 | 0.66 | 0.952892 |
Target: 5'- aGGUCgcggccCAGCAGCUGGGGC--UUGUGg -3' miRNA: 3'- cCUAGa-----GUUGUCGGCCCUGuaGACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 19699 | 0.66 | 0.952892 |
Target: 5'- uGGcgUaCAGC-GCCGGcGcCAUCUGCGg -3' miRNA: 3'- -CCuaGaGUUGuCGGCC-CuGUAGACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 9360 | 0.67 | 0.939552 |
Target: 5'- gGGGUC-CAGgGGCaGGGGCAUgCUGgCGa -3' miRNA: 3'- -CCUAGaGUUgUCGgCCCUGUA-GAC-GC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 108741 | 0.67 | 0.934616 |
Target: 5'- cGGAuUCUC-GCGGCgCGuGGGCcgCUGCc -3' miRNA: 3'- -CCU-AGAGuUGUCG-GC-CCUGuaGACGc -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 21797 | 0.67 | 0.934616 |
Target: 5'- cGAUCUCAcGCAGCCGa-ACAUCgucgggUGCGa -3' miRNA: 3'- cCUAGAGU-UGUCGGCccUGUAG------ACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 44709 | 0.67 | 0.934108 |
Target: 5'- uGGugugCUCGacguGCGGCCGGGACcUCUccaacgaGCGc -3' miRNA: 3'- -CCua--GAGU----UGUCGGCCCUGuAGA-------CGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 81436 | 0.68 | 0.914787 |
Target: 5'- cGGGUCaaguUCAGCGagcaccgggugcaucGCCGGGGCggGUCUaGCGu -3' miRNA: 3'- -CCUAG----AGUUGU---------------CGGCCCUG--UAGA-CGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 18941 | 0.68 | 0.912385 |
Target: 5'- -----aCAGCAGgCGGGACAUCcGCu -3' miRNA: 3'- ccuagaGUUGUCgGCCCUGUAGaCGc -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 61711 | 0.68 | 0.912385 |
Target: 5'- aGGuaguUCUCcuccuGgAGCCGGGACA--UGCGg -3' miRNA: 3'- -CCu---AGAGu----UgUCGGCCCUGUagACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 36507 | 0.68 | 0.89108 |
Target: 5'- cGGcgCUCGGCGcgacgauccugaacGCCGcGGGCGUCcccgGCGg -3' miRNA: 3'- -CCuaGAGUUGU--------------CGGC-CCUGUAGa---CGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 83840 | 0.69 | 0.879092 |
Target: 5'- cGGGUCUcCAGCA-CCGGcGACGacUCUGgGg -3' miRNA: 3'- -CCUAGA-GUUGUcGGCC-CUGU--AGACgC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 8342 | 0.69 | 0.879092 |
Target: 5'- ---cCUCgAGCAG-CGGGGCAaUCUGCGa -3' miRNA: 3'- ccuaGAG-UUGUCgGCCCUGU-AGACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 89213 | 0.69 | 0.863373 |
Target: 5'- cGGAUCUCcggcCGGCCGGcGcccagcuugcggaGCAUCgUGCGg -3' miRNA: 3'- -CCUAGAGuu--GUCGGCC-C-------------UGUAG-ACGC- -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 128435 | 0.7 | 0.814304 |
Target: 5'- gGGGUCcccgCgGGCGGCCGGGuACGaccUCUGCa -3' miRNA: 3'- -CCUAGa---G-UUGUCGGCCC-UGU---AGACGc -5' |
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25946 | 5' | -53.6 | NC_005337.1 | + | 122338 | 0.7 | 0.805347 |
Target: 5'- aGGUCUC--CGGCCGGGACgacGUCgGCa -3' miRNA: 3'- cCUAGAGuuGUCGGCCCUG---UAGaCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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