miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25947 3' -53.9 NC_005337.1 + 65334 0.66 0.964705
Target:  5'- cGGugcCGCCGCgCGGGuACGGgucGAUGc -3'
miRNA:   3'- -CCu--GCGGUG-GCCCuUGCCauaCUACu -5'
25947 3' -53.9 NC_005337.1 + 7947 0.66 0.964705
Target:  5'- -cGCGCCAUCaGGGAGuCGGgGUGAgGGg -3'
miRNA:   3'- ccUGCGGUGG-CCCUU-GCCaUACUaCU- -5'
25947 3' -53.9 NC_005337.1 + 11083 0.66 0.96128
Target:  5'- cGGuCGCCGCCGcgaccgcagcuGGAGaGGUAccgGGUGAu -3'
miRNA:   3'- -CCuGCGGUGGC-----------CCUUgCCAUa--CUACU- -5'
25947 3' -53.9 NC_005337.1 + 114550 0.66 0.96128
Target:  5'- uGGAgGCCAUCGuGGAggcGCGGccgcaGAUGGc -3'
miRNA:   3'- -CCUgCGGUGGC-CCU---UGCCaua--CUACU- -5'
25947 3' -53.9 NC_005337.1 + 84893 0.66 0.95763
Target:  5'- ---gGCCGCgGGGGGCGGUGcGgcGGu -3'
miRNA:   3'- ccugCGGUGgCCCUUGCCAUaCuaCU- -5'
25947 3' -53.9 NC_005337.1 + 52107 0.66 0.95763
Target:  5'- cGGCGCgACCGGG-ACGGacGUGGc-- -3'
miRNA:   3'- cCUGCGgUGGCCCuUGCCa-UACUacu -5'
25947 3' -53.9 NC_005337.1 + 39275 0.66 0.953752
Target:  5'- cGGugGCCgcGCUGGcGGCGGcgGUGAUa- -3'
miRNA:   3'- -CCugCGG--UGGCCcUUGCCa-UACUAcu -5'
25947 3' -53.9 NC_005337.1 + 71484 0.66 0.953752
Target:  5'- uGGACGCCacGCCGGacGCGGUGc----- -3'
miRNA:   3'- -CCUGCGG--UGGCCcuUGCCAUacuacu -5'
25947 3' -53.9 NC_005337.1 + 43637 0.66 0.949641
Target:  5'- -aGCGCCGCCGcgcgaucaaGGAACGG-GUGAa-- -3'
miRNA:   3'- ccUGCGGUGGC---------CCUUGCCaUACUacu -5'
25947 3' -53.9 NC_005337.1 + 50049 0.66 0.949641
Target:  5'- aGAUGCCGCgCuGGAACaGGUgguacAUGAUGGc -3'
miRNA:   3'- cCUGCGGUG-GcCCUUG-CCA-----UACUACU- -5'
25947 3' -53.9 NC_005337.1 + 35964 0.66 0.949641
Target:  5'- gGGACGCCGCCGcGGcaGGgGGUAa----- -3'
miRNA:   3'- -CCUGCGGUGGC-CC--UUgCCAUacuacu -5'
25947 3' -53.9 NC_005337.1 + 88274 0.66 0.945294
Target:  5'- cGGGCGCCGCgGaGGAcAUGGccgaGAUGGa -3'
miRNA:   3'- -CCUGCGGUGgC-CCU-UGCCaua-CUACU- -5'
25947 3' -53.9 NC_005337.1 + 90096 0.66 0.945294
Target:  5'- aGGAUGCUcucGCCGGucagcugguCGGUGUcGAUGAg -3'
miRNA:   3'- -CCUGCGG---UGGCCcuu------GCCAUA-CUACU- -5'
25947 3' -53.9 NC_005337.1 + 6565 0.66 0.945294
Target:  5'- uGGACGCCAgCGcuGcGCGGUccgGAUGGa -3'
miRNA:   3'- -CCUGCGGUgGCc-CuUGCCAua-CUACU- -5'
25947 3' -53.9 NC_005337.1 + 38505 0.66 0.945294
Target:  5'- aGGugGCCGcCCGGGcGCGcc-UGGUGc -3'
miRNA:   3'- -CCugCGGU-GGCCCuUGCcauACUACu -5'
25947 3' -53.9 NC_005337.1 + 96131 0.67 0.940708
Target:  5'- aGGAUGCCGCgGccggugagccGGAACGcGUA-GAUGGc -3'
miRNA:   3'- -CCUGCGGUGgC----------CCUUGC-CAUaCUACU- -5'
25947 3' -53.9 NC_005337.1 + 90445 0.67 0.940708
Target:  5'- -cGCGCCGCCGGcccgcugcAGCGuGgagGUGAUGAg -3'
miRNA:   3'- ccUGCGGUGGCCc-------UUGC-Ca--UACUACU- -5'
25947 3' -53.9 NC_005337.1 + 131604 0.67 0.940708
Target:  5'- cGGACGuCCugCGGGcugGACGacucuuuuuGUAUGAacUGAg -3'
miRNA:   3'- -CCUGC-GGugGCCC---UUGC---------CAUACU--ACU- -5'
25947 3' -53.9 NC_005337.1 + 27450 0.67 0.940708
Target:  5'- cGugGUgGCgGGGAcgggACGGUAacauuUGGUGAa -3'
miRNA:   3'- cCugCGgUGgCCCU----UGCCAU-----ACUACU- -5'
25947 3' -53.9 NC_005337.1 + 44284 0.67 0.940708
Target:  5'- cGACGUCACCGGGAGCa--------- -3'
miRNA:   3'- cCUGCGGUGGCCCUUGccauacuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.