miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25947 3' -53.9 NC_005337.1 + 130786 0.67 0.93588
Target:  5'- uGGGCGCCGCCGGu-GCGGc------- -3'
miRNA:   3'- -CCUGCGGUGGCCcuUGCCauacuacu -5'
25947 3' -53.9 NC_005337.1 + 13652 0.67 0.93081
Target:  5'- aGGACGCg--CGGGAugGGcAUGAaGAa -3'
miRNA:   3'- -CCUGCGgugGCCCUugCCaUACUaCU- -5'
25947 3' -53.9 NC_005337.1 + 94055 0.67 0.925496
Target:  5'- cGACGagguuCCGGGAACGGgcUGGUc- -3'
miRNA:   3'- cCUGCggu--GGCCCUUGCCauACUAcu -5'
25947 3' -53.9 NC_005337.1 + 26585 0.67 0.924951
Target:  5'- cGACGUCGCCGGGGgagcgacacGCGGgGUccuccagcuccacGGUGAa -3'
miRNA:   3'- cCUGCGGUGGCCCU---------UGCCaUA-------------CUACU- -5'
25947 3' -53.9 NC_005337.1 + 40052 0.68 0.914137
Target:  5'- cGGuGCGCCgaACCGGGGAcCGGUAccgcGcgGAg -3'
miRNA:   3'- -CC-UGCGG--UGGCCCUU-GCCAUa---CuaCU- -5'
25947 3' -53.9 NC_005337.1 + 18948 0.68 0.913544
Target:  5'- --cCGCCGCCGGGcguccgagcACGGUGUaccaccguccgucGAUGAa -3'
miRNA:   3'- ccuGCGGUGGCCCu--------UGCCAUA-------------CUACU- -5'
25947 3' -53.9 NC_005337.1 + 48643 0.68 0.908095
Target:  5'- cGGACGCCAgCGcgcagcuGGACGccGUGAUGAa -3'
miRNA:   3'- -CCUGCGGUgGCc------CUUGCcaUACUACU- -5'
25947 3' -53.9 NC_005337.1 + 84570 0.68 0.908095
Target:  5'- cGGcGCGCCGagcCCGGGGcGCuGGUGUGgGUGAc -3'
miRNA:   3'- -CC-UGCGGU---GGCCCU-UG-CCAUAC-UACU- -5'
25947 3' -53.9 NC_005337.1 + 93459 0.68 0.907477
Target:  5'- cGGAagacgccCGCCGgCGGGAACGugGUGGUGc -3'
miRNA:   3'- -CCU-------GCGGUgGCCCUUGCcaUACUACu -5'
25947 3' -53.9 NC_005337.1 + 84381 0.68 0.895291
Target:  5'- cGGugGUCGCCGGGuucGCGGac-GAgGAg -3'
miRNA:   3'- -CCugCGGUGGCCCu--UGCCauaCUaCU- -5'
25947 3' -53.9 NC_005337.1 + 72175 0.69 0.874339
Target:  5'- uGGAgGCCACgGGGAA-GGUGUaccUGAa -3'
miRNA:   3'- -CCUgCGGUGgCCCUUgCCAUAcu-ACU- -5'
25947 3' -53.9 NC_005337.1 + 126830 0.69 0.866907
Target:  5'- cGGACGCCGacgugaacuuCCGGG-GCGaGUAUGGccgGAc -3'
miRNA:   3'- -CCUGCGGU----------GGCCCuUGC-CAUACUa--CU- -5'
25947 3' -53.9 NC_005337.1 + 35362 0.69 0.851402
Target:  5'- cGGACgGCUGgCGGGcgGACGGUGacuUGGUGGu -3'
miRNA:   3'- -CCUG-CGGUgGCCC--UUGCCAU---ACUACU- -5'
25947 3' -53.9 NC_005337.1 + 18629 0.69 0.851402
Target:  5'- uGACGUUGCCGgaGGggUGGUGUG-UGAu -3'
miRNA:   3'- cCUGCGGUGGC--CCuuGCCAUACuACU- -5'
25947 3' -53.9 NC_005337.1 + 44368 0.7 0.809223
Target:  5'- gGGGCGacgccccgccgcCCACCGGGAugGGgccUGUGgcGGa -3'
miRNA:   3'- -CCUGC------------GGUGGCCCUugCC---AUACuaCU- -5'
25947 3' -53.9 NC_005337.1 + 38001 0.7 0.800263
Target:  5'- -aACGCCGCCGGGAACGccg-GcAUGGc -3'
miRNA:   3'- ccUGCGGUGGCCCUUGCcauaC-UACU- -5'
25947 3' -53.9 NC_005337.1 + 130074 0.71 0.781887
Target:  5'- cGACGCCGCU-GGAAUGGaccacccgGUGAUGGa -3'
miRNA:   3'- cCUGCGGUGGcCCUUGCCa-------UACUACU- -5'
25947 3' -53.9 NC_005337.1 + 1059 0.72 0.693498
Target:  5'- gGGAgGCCGgCGGGGGCGGacUGcgGGa -3'
miRNA:   3'- -CCUgCGGUgGCCCUUGCCauACuaCU- -5'
25947 3' -53.9 NC_005337.1 + 1059 0.72 0.693498
Target:  5'- gGGAgGCCGgCGGGGGCGGacUGcgGGa -3'
miRNA:   3'- -CCUgCGGUgGCCCUUGCCauACuaCU- -5'
25947 3' -53.9 NC_005337.1 + 72593 0.73 0.68329
Target:  5'- cGACGCCuCCGGGucgcgcGCGGgcGUGGUGGu -3'
miRNA:   3'- cCUGCGGuGGCCCu-----UGCCa-UACUACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.