miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25947 3' -53.9 NC_005337.1 + 1059 0.72 0.693498
Target:  5'- gGGAgGCCGgCGGGGGCGGacUGcgGGa -3'
miRNA:   3'- -CCUgCGGUgGCCCUUGCCauACuaCU- -5'
25947 3' -53.9 NC_005337.1 + 1059 0.72 0.693498
Target:  5'- gGGAgGCCGgCGGGGGCGGacUGcgGGa -3'
miRNA:   3'- -CCUgCGGUgGCCCUUGCCauACuaCU- -5'
25947 3' -53.9 NC_005337.1 + 6565 0.66 0.945294
Target:  5'- uGGACGCCAgCGcuGcGCGGUccgGAUGGa -3'
miRNA:   3'- -CCUGCGGUgGCc-CuUGCCAua-CUACU- -5'
25947 3' -53.9 NC_005337.1 + 7947 0.66 0.964705
Target:  5'- -cGCGCCAUCaGGGAGuCGGgGUGAgGGg -3'
miRNA:   3'- ccUGCGGUGG-CCCUU-GCCaUACUaCU- -5'
25947 3' -53.9 NC_005337.1 + 11083 0.66 0.96128
Target:  5'- cGGuCGCCGCCGcgaccgcagcuGGAGaGGUAccgGGUGAu -3'
miRNA:   3'- -CCuGCGGUGGC-----------CCUUgCCAUa--CUACU- -5'
25947 3' -53.9 NC_005337.1 + 13652 0.67 0.93081
Target:  5'- aGGACGCg--CGGGAugGGcAUGAaGAa -3'
miRNA:   3'- -CCUGCGgugGCCCUugCCaUACUaCU- -5'
25947 3' -53.9 NC_005337.1 + 18629 0.69 0.851402
Target:  5'- uGACGUUGCCGgaGGggUGGUGUG-UGAu -3'
miRNA:   3'- cCUGCGGUGGC--CCuuGCCAUACuACU- -5'
25947 3' -53.9 NC_005337.1 + 18948 0.68 0.913544
Target:  5'- --cCGCCGCCGGGcguccgagcACGGUGUaccaccguccgucGAUGAa -3'
miRNA:   3'- ccuGCGGUGGCCCu--------UGCCAUA-------------CUACU- -5'
25947 3' -53.9 NC_005337.1 + 26585 0.67 0.924951
Target:  5'- cGACGUCGCCGGGGgagcgacacGCGGgGUccuccagcuccacGGUGAa -3'
miRNA:   3'- cCUGCGGUGGCCCU---------UGCCaUA-------------CUACU- -5'
25947 3' -53.9 NC_005337.1 + 27450 0.67 0.940708
Target:  5'- cGugGUgGCgGGGAcgggACGGUAacauuUGGUGAa -3'
miRNA:   3'- cCugCGgUGgCCCU----UGCCAU-----ACUACU- -5'
25947 3' -53.9 NC_005337.1 + 35362 0.69 0.851402
Target:  5'- cGGACgGCUGgCGGGcgGACGGUGacuUGGUGGu -3'
miRNA:   3'- -CCUG-CGGUgGCCC--UUGCCAU---ACUACU- -5'
25947 3' -53.9 NC_005337.1 + 35760 0.74 0.580273
Target:  5'- uGGGCGCgACCGGGAucgugGCGcGUGUcAUGAc -3'
miRNA:   3'- -CCUGCGgUGGCCCU-----UGC-CAUAcUACU- -5'
25947 3' -53.9 NC_005337.1 + 35964 0.66 0.949641
Target:  5'- gGGACGCCGCCGcGGcaGGgGGUAa----- -3'
miRNA:   3'- -CCUGCGGUGGC-CC--UUgCCAUacuacu -5'
25947 3' -53.9 NC_005337.1 + 38001 0.7 0.800263
Target:  5'- -aACGCCGCCGGGAACGccg-GcAUGGc -3'
miRNA:   3'- ccUGCGGUGGCCCUUGCcauaC-UACU- -5'
25947 3' -53.9 NC_005337.1 + 38505 0.66 0.945294
Target:  5'- aGGugGCCGcCCGGGcGCGcc-UGGUGc -3'
miRNA:   3'- -CCugCGGU-GGCCCuUGCcauACUACu -5'
25947 3' -53.9 NC_005337.1 + 39275 0.66 0.953752
Target:  5'- cGGugGCCgcGCUGGcGGCGGcgGUGAUa- -3'
miRNA:   3'- -CCugCGG--UGGCCcUUGCCa-UACUAcu -5'
25947 3' -53.9 NC_005337.1 + 40052 0.68 0.914137
Target:  5'- cGGuGCGCCgaACCGGGGAcCGGUAccgcGcgGAg -3'
miRNA:   3'- -CC-UGCGG--UGGCCCUU-GCCAUa---CuaCU- -5'
25947 3' -53.9 NC_005337.1 + 43637 0.66 0.949641
Target:  5'- -aGCGCCGCCGcgcgaucaaGGAACGG-GUGAa-- -3'
miRNA:   3'- ccUGCGGUGGC---------CCUUGCCaUACUacu -5'
25947 3' -53.9 NC_005337.1 + 44284 0.67 0.940708
Target:  5'- cGACGUCACCGGGAGCa--------- -3'
miRNA:   3'- cCUGCGGUGGCCCUUGccauacuacu -5'
25947 3' -53.9 NC_005337.1 + 44368 0.7 0.809223
Target:  5'- gGGGCGacgccccgccgcCCACCGGGAugGGgccUGUGgcGGa -3'
miRNA:   3'- -CCUGC------------GGUGGCCCUugCC---AUACuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.