miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25947 5' -54.7 NC_005337.1 + 48600 0.66 0.932372
Target:  5'- -aUCGUGUcCCUGAacgcgauguacaagaGCAUCCGCaGCGa -3'
miRNA:   3'- caAGCGCAuGGACU---------------UGUGGGUGcCGU- -5'
25947 5' -54.7 NC_005337.1 + 53103 0.66 0.930285
Target:  5'- --cCGUGUuccCCaUGGGCAUCCGCGuGCAg -3'
miRNA:   3'- caaGCGCAu--GG-ACUUGUGGGUGC-CGU- -5'
25947 5' -54.7 NC_005337.1 + 18916 0.66 0.930285
Target:  5'- -gUCGCGgGCUUGAGCgcguACCCGaacagcaGGCGg -3'
miRNA:   3'- caAGCGCaUGGACUUG----UGGGUg------CCGU- -5'
25947 5' -54.7 NC_005337.1 + 53945 0.66 0.930285
Target:  5'- -aUCGC--GCCUGGAacCGCuCCGCGGUg -3'
miRNA:   3'- caAGCGcaUGGACUU--GUG-GGUGCCGu -5'
25947 5' -54.7 NC_005337.1 + 104506 0.66 0.930285
Target:  5'- -cUCGCGcACCcGGACGCCCGguUGGaCGa -3'
miRNA:   3'- caAGCGCaUGGaCUUGUGGGU--GCC-GU- -5'
25947 5' -54.7 NC_005337.1 + 107231 0.66 0.930285
Target:  5'- --cUGCgGUACCUGG--ACUCGCGGCu -3'
miRNA:   3'- caaGCG-CAUGGACUugUGGGUGCCGu -5'
25947 5' -54.7 NC_005337.1 + 83637 0.66 0.927081
Target:  5'- -gUCGCGUugcugcuguccauugACCUGGACAgCagcCGGCGc -3'
miRNA:   3'- caAGCGCA---------------UGGACUUGUgGgu-GCCGU- -5'
25947 5' -54.7 NC_005337.1 + 119065 0.66 0.924896
Target:  5'- -cUCGCGgugugucgcaGCCUGGACugcaugACCCucgACGGCGa -3'
miRNA:   3'- caAGCGCa---------UGGACUUG------UGGG---UGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 33590 0.66 0.924896
Target:  5'- -gUCGCGUcgGCC---GCGCgCGCGGCGc -3'
miRNA:   3'- caAGCGCA--UGGacuUGUGgGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 83143 0.66 0.924896
Target:  5'- aGUUCGCcUGCUcGucgguGCGCUCGCGGUAg -3'
miRNA:   3'- -CAAGCGcAUGGaCu----UGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 10575 0.66 0.924896
Target:  5'- ---gGCGUGCCcagcCGCCgCACGGCGu -3'
miRNA:   3'- caagCGCAUGGacuuGUGG-GUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 9953 0.66 0.924896
Target:  5'- --cCGCGU-CCaUGAGCGCCUGCGccGCGa -3'
miRNA:   3'- caaGCGCAuGG-ACUUGUGGGUGC--CGU- -5'
25947 5' -54.7 NC_005337.1 + 72523 0.66 0.919258
Target:  5'- --aCGcCGguuCCUGGACACCCGCGuGg- -3'
miRNA:   3'- caaGC-GCau-GGACUUGUGGGUGC-Cgu -5'
25947 5' -54.7 NC_005337.1 + 125408 0.66 0.919258
Target:  5'- --cUGCGUGCCgu--CAUgCACGGCGg -3'
miRNA:   3'- caaGCGCAUGGacuuGUGgGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 11154 0.66 0.918681
Target:  5'- gGUUUGCaGUACUggGAGCGCCagucccgcucgaaUACGGCGg -3'
miRNA:   3'- -CAAGCG-CAUGGa-CUUGUGG-------------GUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 130031 0.66 0.913373
Target:  5'- --cCGCGgucgccGCgCUGAACACUCAccCGGCGa -3'
miRNA:   3'- caaGCGCa-----UG-GACUUGUGGGU--GCCGU- -5'
25947 5' -54.7 NC_005337.1 + 48017 0.66 0.913373
Target:  5'- --cCGCGcGCUgcgGAGCACgaaCACGGCGg -3'
miRNA:   3'- caaGCGCaUGGa--CUUGUGg--GUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 56412 0.66 0.913373
Target:  5'- --cUGaUGUACCUGcugGGCACCUACgGGCAg -3'
miRNA:   3'- caaGC-GCAUGGAC---UUGUGGGUG-CCGU- -5'
25947 5' -54.7 NC_005337.1 + 127868 0.66 0.913373
Target:  5'- --gUGCGUGCacaguCUGGugGCgCGCGGCGc -3'
miRNA:   3'- caaGCGCAUG-----GACUugUGgGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 117414 0.66 0.907241
Target:  5'- uGUUCGUGUACCUcGACAC-CugGaGCc -3'
miRNA:   3'- -CAAGCGCAUGGAcUUGUGgGugC-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.