miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25947 5' -54.7 NC_005337.1 + 121620 1.08 0.003694
Target:  5'- uGUUCGCGUACCUGAACACCCACGGCAu -3'
miRNA:   3'- -CAAGCGCAUGGACUUGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 132170 0.8 0.252957
Target:  5'- --aCGCGUGCCUGAccGgGCUCGCGGCGc -3'
miRNA:   3'- caaGCGCAUGGACU--UgUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 51673 0.78 0.306426
Target:  5'- -gUCGCc--CCUGGACGCCUACGGCGa -3'
miRNA:   3'- caAGCGcauGGACUUGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 72034 0.77 0.376419
Target:  5'- aGUUCGCGUACCUGugccGGCACau-CGGCAu -3'
miRNA:   3'- -CAAGCGCAUGGAC----UUGUGgguGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 49849 0.76 0.419704
Target:  5'- --aCGCGaACCgGGACGCCgGCGGCAu -3'
miRNA:   3'- caaGCGCaUGGaCUUGUGGgUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 23916 0.76 0.419704
Target:  5'- --cCGCGcGCCcGcGCGCCCGCGGCAg -3'
miRNA:   3'- caaGCGCaUGGaCuUGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 122552 0.75 0.456423
Target:  5'- -cUCGCGgcugugcugcGCCaUGAucACGCCCACGGCAa -3'
miRNA:   3'- caAGCGCa---------UGG-ACU--UGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 105364 0.74 0.494801
Target:  5'- -aUCGCGUGCUUGGuCACCU-CGGCGc -3'
miRNA:   3'- caAGCGCAUGGACUuGUGGGuGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 64349 0.73 0.565137
Target:  5'- --cCGCGUgaaggAUCUGcGCACCUACGGCGu -3'
miRNA:   3'- caaGCGCA-----UGGACuUGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 130253 0.73 0.565137
Target:  5'- --aCGCGUACCUGcACACCgGUGGCc -3'
miRNA:   3'- caaGCGCAUGGACuUGUGGgUGCCGu -5'
25947 5' -54.7 NC_005337.1 + 130773 0.73 0.565137
Target:  5'- cUUCGCGcagACCUGGGCGCCgCcgguGCGGCu -3'
miRNA:   3'- cAAGCGCa--UGGACUUGUGG-G----UGCCGu -5'
25947 5' -54.7 NC_005337.1 + 6041 0.73 0.596132
Target:  5'- -gUCGCGgGCgUGGauguccGCGCCCGCGGCc -3'
miRNA:   3'- caAGCGCaUGgACU------UGUGGGUGCCGu -5'
25947 5' -54.7 NC_005337.1 + 132115 0.73 0.596132
Target:  5'- -gUCGCGcugggUGCCgacgUGAACGCCCGgGGCGu -3'
miRNA:   3'- caAGCGC-----AUGG----ACUUGUGGGUgCCGU- -5'
25947 5' -54.7 NC_005337.1 + 29583 0.72 0.626328
Target:  5'- cGUUgGCcUGCCgGAugagcuuggucuuGCGCCCGCGGCAg -3'
miRNA:   3'- -CAAgCGcAUGGaCU-------------UGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 97739 0.72 0.627371
Target:  5'- --cCGCccaGCCgccggGGACGCCCGCGGCGu -3'
miRNA:   3'- caaGCGca-UGGa----CUUGUGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 107534 0.72 0.64823
Target:  5'- uUUCGCGgcgACCgGAGCACCgacaaggACGGCAa -3'
miRNA:   3'- cAAGCGCa--UGGaCUUGUGGg------UGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 108551 0.72 0.658643
Target:  5'- gGggCGCGcGCCUG-ACGCUgGCGGCGc -3'
miRNA:   3'- -CaaGCGCaUGGACuUGUGGgUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 41437 0.71 0.699986
Target:  5'- --aCGCGuUugUUGAGCucgcucGCCCGCGGCGu -3'
miRNA:   3'- caaGCGC-AugGACUUG------UGGGUGCCGU- -5'
25947 5' -54.7 NC_005337.1 + 66549 0.71 0.710197
Target:  5'- ---gGgGUACCUccuGCGCCCGCGGCc -3'
miRNA:   3'- caagCgCAUGGAcu-UGUGGGUGCCGu -5'
25947 5' -54.7 NC_005337.1 + 9354 0.7 0.730403
Target:  5'- --aCGCGUcGCCUGGACGCgCGCuGCGc -3'
miRNA:   3'- caaGCGCA-UGGACUUGUGgGUGcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.