miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25948 3' -54.4 NC_005337.1 + 48318 0.66 0.948285
Target:  5'- uGCGCgGGCGCgcugacGGGCAUgAgccggGCGcCGGUGAa -3'
miRNA:   3'- -CGUG-CCGCG------CCUGUAgU-----UGC-GCUACU- -5'
25948 3' -54.4 NC_005337.1 + 14904 0.66 0.948285
Target:  5'- gGCGCGGCGCcgauGGugGaagCAGCucucGUGGUGGc -3'
miRNA:   3'- -CGUGCCGCG----CCugUa--GUUG----CGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 54447 0.66 0.948285
Target:  5'- cCACGGaUGUGGuCAUCAGC-CaGAUGAa -3'
miRNA:   3'- cGUGCC-GCGCCuGUAGUUGcG-CUACU- -5'
25948 3' -54.4 NC_005337.1 + 65796 0.66 0.948285
Target:  5'- aGCGCGGCGCccGGuGCggCGGCGuCGAa-- -3'
miRNA:   3'- -CGUGCCGCG--CC-UGuaGUUGC-GCUacu -5'
25948 3' -54.4 NC_005337.1 + 38388 0.66 0.948285
Target:  5'- aGCACGaGCGCccuGCuagaCGAUGCGAUGGa -3'
miRNA:   3'- -CGUGC-CGCGcc-UGua--GUUGCGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 16033 0.66 0.947853
Target:  5'- uGCGCGGCGUcuccucGGGC-UCcGCGCacugcauGAUGAc -3'
miRNA:   3'- -CGUGCCGCG------CCUGuAGuUGCG-------CUACU- -5'
25948 3' -54.4 NC_005337.1 + 35704 0.66 0.945656
Target:  5'- -gGCGaGCGCGGGCuccGUCuaccggugcguggacGGCGUGGUGGu -3'
miRNA:   3'- cgUGC-CGCGCCUG---UAG---------------UUGCGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 67888 0.66 0.943856
Target:  5'- gGCGCaGCGCGuGC-UCGAaGCGGUGGa -3'
miRNA:   3'- -CGUGcCGCGCcUGuAGUUgCGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 84467 0.66 0.943856
Target:  5'- gGCGCGGC-CGGcaccucCGUCAGCGaCG-UGAc -3'
miRNA:   3'- -CGUGCCGcGCCu-----GUAGUUGC-GCuACU- -5'
25948 3' -54.4 NC_005337.1 + 125216 0.66 0.943856
Target:  5'- cGCgACGGUGCGGACGUgAACuucaCGGg-- -3'
miRNA:   3'- -CG-UGCCGCGCCUGUAgUUGc---GCUacu -5'
25948 3' -54.4 NC_005337.1 + 3572 0.66 0.943856
Target:  5'- aCACGGagucCGGGCccGUCAGCGCGGa-- -3'
miRNA:   3'- cGUGCCgc--GCCUG--UAGUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 88298 0.66 0.943856
Target:  5'- -gGCGGacaucaagcuCGgGGACGUCAGCGUGGa-- -3'
miRNA:   3'- cgUGCC----------GCgCCUGUAGUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 127716 0.66 0.943856
Target:  5'- cGCGCaGCGCuGGCGUCcACGCuGcUGAa -3'
miRNA:   3'- -CGUGcCGCGcCUGUAGuUGCG-CuACU- -5'
25948 3' -54.4 NC_005337.1 + 34712 0.66 0.943856
Target:  5'- cGCGCGGCaUGGuCAccuucuUUAGCGCGAaggUGAc -3'
miRNA:   3'- -CGUGCCGcGCCuGU------AGUUGCGCU---ACU- -5'
25948 3' -54.4 NC_005337.1 + 56936 0.66 0.943856
Target:  5'- aGCGCGGagGCGGcCAUCucgcCGCGG-GAc -3'
miRNA:   3'- -CGUGCCg-CGCCuGUAGuu--GCGCUaCU- -5'
25948 3' -54.4 NC_005337.1 + 12090 0.66 0.943856
Target:  5'- gGCGaugaGGCGCGGGCAcgcuUCGGgGUuguaGAUGGc -3'
miRNA:   3'- -CGUg---CCGCGCCUGU----AGUUgCG----CUACU- -5'
25948 3' -54.4 NC_005337.1 + 80121 0.66 0.943856
Target:  5'- -gGCGGuCGUGGACAcCGgGCGCGAc-- -3'
miRNA:   3'- cgUGCC-GCGCCUGUaGU-UGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 105430 0.66 0.939186
Target:  5'- aGCACGGCGUacugccgcauGGuC-UCGAUGUGGUGc -3'
miRNA:   3'- -CGUGCCGCG----------CCuGuAGUUGCGCUACu -5'
25948 3' -54.4 NC_005337.1 + 10723 0.66 0.939186
Target:  5'- cCACGGCcauGugGUCAGgGCGGUGGg -3'
miRNA:   3'- cGUGCCGcgcCugUAGUUgCGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 108157 0.66 0.939186
Target:  5'- cGUcUGGagGCGGAgAUCGcCGCGGUGGa -3'
miRNA:   3'- -CGuGCCg-CGCCUgUAGUuGCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.