miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25948 3' -54.4 NC_005337.1 + 105430 0.66 0.939186
Target:  5'- aGCACGGCGUacugccgcauGGuC-UCGAUGUGGUGc -3'
miRNA:   3'- -CGUGCCGCG----------CCuGuAGUUGCGCUACu -5'
25948 3' -54.4 NC_005337.1 + 108157 0.66 0.939186
Target:  5'- cGUcUGGagGCGGAgAUCGcCGCGGUGGa -3'
miRNA:   3'- -CGuGCCg-CGCCUgUAGUuGCGCUACU- -5'
25948 3' -54.4 NC_005337.1 + 45949 0.66 0.939186
Target:  5'- cGCGcCGGCGCGcguGGCGUCcACGC--UGAc -3'
miRNA:   3'- -CGU-GCCGCGC---CUGUAGuUGCGcuACU- -5'
25948 3' -54.4 NC_005337.1 + 73616 0.66 0.939186
Target:  5'- gGCACGaGCG-GGACAUCGuCaCGGUGc -3'
miRNA:   3'- -CGUGC-CGCgCCUGUAGUuGcGCUACu -5'
25948 3' -54.4 NC_005337.1 + 102415 0.66 0.939186
Target:  5'- cCACGGgCGgGGACAUCcccgaguACGUGAa-- -3'
miRNA:   3'- cGUGCC-GCgCCUGUAGu------UGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 84238 0.66 0.936268
Target:  5'- aGCGCGGCaucuuccuggacgacGUGuGCGUCGACGUGGUc- -3'
miRNA:   3'- -CGUGCCG---------------CGCcUGUAGUUGCGCUAcu -5'
25948 3' -54.4 NC_005337.1 + 69405 0.66 0.934274
Target:  5'- gGCACGcgauCGCGGACAUguGCGCc---- -3'
miRNA:   3'- -CGUGCc---GCGCCUGUAguUGCGcuacu -5'
25948 3' -54.4 NC_005337.1 + 43074 0.66 0.934274
Target:  5'- -gGCGGCGCGcccguccGCAUCGcgGCGCccggGAUGAa -3'
miRNA:   3'- cgUGCCGCGCc------UGUAGU--UGCG----CUACU- -5'
25948 3' -54.4 NC_005337.1 + 80580 0.66 0.934274
Target:  5'- aGCAU-GCGCGGcaGCuUCAGCGCGGc-- -3'
miRNA:   3'- -CGUGcCGCGCC--UGuAGUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 100688 0.66 0.934274
Target:  5'- cCGCGcGCGCGGcCGacgCGACGCGGc-- -3'
miRNA:   3'- cGUGC-CGCGCCuGUa--GUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 104291 0.66 0.934274
Target:  5'- cGCGCGG-GCGGuccGCGagGGCGCGgcGGc -3'
miRNA:   3'- -CGUGCCgCGCC---UGUagUUGCGCuaCU- -5'
25948 3' -54.4 NC_005337.1 + 103330 0.66 0.934274
Target:  5'- -aGCGGCuggaGGACAUCcuGCGCG-UGAu -3'
miRNA:   3'- cgUGCCGcg--CCUGUAGu-UGCGCuACU- -5'
25948 3' -54.4 NC_005337.1 + 132119 0.66 0.934274
Target:  5'- cGCugGGUGCcGACGUgAACGCccgGGg -3'
miRNA:   3'- -CGugCCGCGcCUGUAgUUGCGcuaCU- -5'
25948 3' -54.4 NC_005337.1 + 48155 0.66 0.929118
Target:  5'- gGCACGGaGcCGGAC-UCcucGCGCGcgGAg -3'
miRNA:   3'- -CGUGCCgC-GCCUGuAGu--UGCGCuaCU- -5'
25948 3' -54.4 NC_005337.1 + 125357 0.66 0.929118
Target:  5'- cGUACGGCGgGGACccagacucuGUaGACGCGGc-- -3'
miRNA:   3'- -CGUGCCGCgCCUG---------UAgUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 34064 0.66 0.929118
Target:  5'- aCGCGGCGcCGGcCGUCGuagagcaggccGCG-GAUGAa -3'
miRNA:   3'- cGUGCCGC-GCCuGUAGU-----------UGCgCUACU- -5'
25948 3' -54.4 NC_005337.1 + 30108 0.66 0.929118
Target:  5'- cGCAgagGGCGCGGu--UCAGCGgGggGAu -3'
miRNA:   3'- -CGUg--CCGCGCCuguAGUUGCgCuaCU- -5'
25948 3' -54.4 NC_005337.1 + 69552 0.66 0.929118
Target:  5'- -gGC-GCGCGGGCugcUCGGCGCGGa-- -3'
miRNA:   3'- cgUGcCGCGCCUGu--AGUUGCGCUacu -5'
25948 3' -54.4 NC_005337.1 + 38250 0.66 0.929118
Target:  5'- gGCG-GGCGCGGAuCAUUu-CGCGAcGGg -3'
miRNA:   3'- -CGUgCCGCGCCU-GUAGuuGCGCUaCU- -5'
25948 3' -54.4 NC_005337.1 + 118937 0.66 0.929118
Target:  5'- cGCGCGGgcgcaGCGuGCGUCG-CGCGAUa- -3'
miRNA:   3'- -CGUGCCg----CGCcUGUAGUuGCGCUAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.