miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25948 5' -55.3 NC_005337.1 + 91193 0.66 0.933937
Target:  5'- --cCGgGCGCCGCgaugcggACgggcGCGCCGCc -3'
miRNA:   3'- ccaGUgUGCGGCGaca----UGa---UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 105949 0.66 0.933937
Target:  5'- --cCACGgGCUGCUGUuccuggACgACGCgCGCg -3'
miRNA:   3'- ccaGUGUgCGGCGACA------UGaUGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 20325 0.66 0.933937
Target:  5'- cGUUGCGCGCUGCcuucuUGCUGCauCCGCu -3'
miRNA:   3'- cCAGUGUGCGGCGac---AUGAUGc-GGCG- -5'
25948 5' -55.3 NC_005337.1 + 32979 0.66 0.933937
Target:  5'- --cCGCACGCCGU---ACgcgUGCCGCa -3'
miRNA:   3'- ccaGUGUGCGGCGacaUGau-GCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 13464 0.66 0.933937
Target:  5'- aGUCGCAguCGUCGCagaccGU-CUcGCGCCGCu -3'
miRNA:   3'- cCAGUGU--GCGGCGa----CAuGA-UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 30524 0.66 0.933937
Target:  5'- aGGUCuccaGCGCCuuGCUGaGCacgaUGgGCCGCu -3'
miRNA:   3'- -CCAGug--UGCGG--CGACaUG----AUgCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 86310 0.66 0.933937
Target:  5'- cGUC-CGCGCCGC---ACU-CGCgCGCg -3'
miRNA:   3'- cCAGuGUGCGGCGacaUGAuGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 63927 0.66 0.933937
Target:  5'- cGGcgGCGCaCCGCcGUGCggaACGCCGUc -3'
miRNA:   3'- -CCagUGUGcGGCGaCAUGa--UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 40853 0.66 0.933937
Target:  5'- gGGaCACGCGUCGCcGUGCcccCGgUGCa -3'
miRNA:   3'- -CCaGUGUGCGGCGaCAUGau-GCgGCG- -5'
25948 5' -55.3 NC_005337.1 + 68416 0.66 0.933937
Target:  5'- uGGUagCGCGCGCCGCcG-ACgACGaguCCGCu -3'
miRNA:   3'- -CCA--GUGUGCGGCGaCaUGaUGC---GGCG- -5'
25948 5' -55.3 NC_005337.1 + 119248 0.66 0.933435
Target:  5'- ---gAgAUGCCGCUGUcgcacaugaacaaACUGCGgCGCc -3'
miRNA:   3'- ccagUgUGCGGCGACA-------------UGAUGCgGCG- -5'
25948 5' -55.3 NC_005337.1 + 5813 0.66 0.933435
Target:  5'- cGGUCuccCGCGCCGgUccggcggugugaaGUGCg--GCCGCg -3'
miRNA:   3'- -CCAGu--GUGCGGCgA-------------CAUGaugCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 52333 0.66 0.930889
Target:  5'- cGGcUCAUgucCGCCG-UGUGCUACcggaccggggacgggGCCGCu -3'
miRNA:   3'- -CC-AGUGu--GCGGCgACAUGAUG---------------CGGCG- -5'
25948 5' -55.3 NC_005337.1 + 78147 0.66 0.928809
Target:  5'- ---uGCACGCCGCgcacGCUggcgAUGCCGUg -3'
miRNA:   3'- ccagUGUGCGGCGaca-UGA----UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 2096 0.66 0.928809
Target:  5'- cGG-CGCGCGCCGCgagcccgGUcagGC-ACGCgUGCa -3'
miRNA:   3'- -CCaGUGUGCGGCGa------CA---UGaUGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 72796 0.66 0.928809
Target:  5'- --aCGCGCGCCgGCaggaGUACgaGCGCCGg -3'
miRNA:   3'- ccaGUGUGCGG-CGa---CAUGa-UGCGGCg -5'
25948 5' -55.3 NC_005337.1 + 54254 0.66 0.928809
Target:  5'- cGUC-CGgGCCGg-GUGCggcgcuuaGCGCCGCg -3'
miRNA:   3'- cCAGuGUgCGGCgaCAUGa-------UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 29533 0.66 0.928809
Target:  5'- cGGUCuuCGCGCgGCggccGUGCacccacuCGCUGCu -3'
miRNA:   3'- -CCAGu-GUGCGgCGa---CAUGau-----GCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 132572 0.66 0.928809
Target:  5'- cGGUgGCcguGUCGCUGUugcgacgcgcGCUGCgGCUGCg -3'
miRNA:   3'- -CCAgUGug-CGGCGACA----------UGAUG-CGGCG- -5'
25948 5' -55.3 NC_005337.1 + 89781 0.66 0.928809
Target:  5'- aGUUGCGCGUCGgUG-ACgcgGCCGCg -3'
miRNA:   3'- cCAGUGUGCGGCgACaUGaugCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.