miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25948 5' -55.3 NC_005337.1 + 752 0.67 0.862272
Target:  5'- cGG-CGCcCGCgGCcucgacggcggccaUGUGCUgcGCGCCGCc -3'
miRNA:   3'- -CCaGUGuGCGgCG--------------ACAUGA--UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 752 0.67 0.862272
Target:  5'- cGG-CGCcCGCgGCcucgacggcggccaUGUGCUgcGCGCCGCc -3'
miRNA:   3'- -CCaGUGuGCGgCG--------------ACAUGA--UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 1208 0.67 0.899577
Target:  5'- cGGcCACcgGCGCCGC-GUACgcggACGaaGCu -3'
miRNA:   3'- -CCaGUG--UGCGGCGaCAUGa---UGCggCG- -5'
25948 5' -55.3 NC_005337.1 + 1328 0.67 0.879227
Target:  5'- aGGUCcaGCGCGCUGCaGaGCggguCGCCGa -3'
miRNA:   3'- -CCAG--UGUGCGGCGaCaUGau--GCGGCg -5'
25948 5' -55.3 NC_005337.1 + 1512 0.68 0.859977
Target:  5'- cGG-CGCGCGCCaGCgcguccgccacuucgUGUGCgggcgGCGaCCGCu -3'
miRNA:   3'- -CCaGUGUGCGG-CG---------------ACAUGa----UGC-GGCG- -5'
25948 5' -55.3 NC_005337.1 + 1637 0.71 0.671362
Target:  5'- aGGUCgaugcGCGCGcCCGCggcgacgaGCUugGCCGCc -3'
miRNA:   3'- -CCAG-----UGUGC-GGCGaca-----UGAugCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 2096 0.66 0.928809
Target:  5'- cGG-CGCGCGCCGCgagcccgGUcagGC-ACGCgUGCa -3'
miRNA:   3'- -CCaGUGUGCGGCGa------CA---UGaUGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 2428 0.69 0.819134
Target:  5'- gGGUCGgG-GCCGUcguagugcagguacgUGUGCaGCGCCGUg -3'
miRNA:   3'- -CCAGUgUgCGGCG---------------ACAUGaUGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 3622 0.73 0.548967
Target:  5'- cGGUCGCAgGgCacCUGUGCguccaGCGCCGCg -3'
miRNA:   3'- -CCAGUGUgCgGc-GACAUGa----UGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 5541 0.69 0.814798
Target:  5'- uGUCACGCGCuccagcagcggcuCGCgGUAC-ACGCgCGCc -3'
miRNA:   3'- cCAGUGUGCG-------------GCGaCAUGaUGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 5813 0.66 0.933435
Target:  5'- cGGUCuccCGCGCCGgUccggcggugugaaGUGCg--GCCGCg -3'
miRNA:   3'- -CCAGu--GUGCGGCgA-------------CAUGaugCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 5856 0.69 0.80689
Target:  5'- -cUCGCugGCCuGCg--GCUGCGUgGCg -3'
miRNA:   3'- ccAGUGugCGG-CGacaUGAUGCGgCG- -5'
25948 5' -55.3 NC_005337.1 + 6001 0.66 0.905899
Target:  5'- cGUUGCAgacCGCCGC-GUGCagcgGCGuCCGCc -3'
miRNA:   3'- cCAGUGU---GCGGCGaCAUGa---UGC-GGCG- -5'
25948 5' -55.3 NC_005337.1 + 6250 0.69 0.788865
Target:  5'- aGUCA-GCGUCGCUG-ACgcugGCGCCGg -3'
miRNA:   3'- cCAGUgUGCGGCGACaUGa---UGCGGCg -5'
25948 5' -55.3 NC_005337.1 + 6381 0.67 0.886238
Target:  5'- cGGcccgCACGCGCuCGCcg----GCGCCGCg -3'
miRNA:   3'- -CCa---GUGUGCG-GCGacaugaUGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 6644 0.73 0.579251
Target:  5'- gGGUUgaagAC-CGCCGCgcgGUACaACGCCGUc -3'
miRNA:   3'- -CCAG----UGuGCGGCGa--CAUGaUGCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 6805 0.67 0.893022
Target:  5'- cGGaUCGCA-GCCGCUGUccACgaGCGUgCGCa -3'
miRNA:   3'- -CC-AGUGUgCGGCGACA--UGa-UGCG-GCG- -5'
25948 5' -55.3 NC_005337.1 + 6897 0.7 0.731675
Target:  5'- uGUCGCGCGCgCGCggGU-CcGCGCCGg -3'
miRNA:   3'- cCAGUGUGCG-GCGa-CAuGaUGCGGCg -5'
25948 5' -55.3 NC_005337.1 + 7864 0.75 0.461748
Target:  5'- cGUCGCGCGCCGggcGgcCUugGCCGUg -3'
miRNA:   3'- cCAGUGUGCGGCga-CauGAugCGGCG- -5'
25948 5' -55.3 NC_005337.1 + 8272 0.67 0.893022
Target:  5'- gGGUUgaACGCgGCCGCgacGUGCagcggggucUGCaGCCGCg -3'
miRNA:   3'- -CCAG--UGUG-CGGCGa--CAUG---------AUG-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.