miRNA display CGI

Results 1 - 20 of 901 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
25949	3'	-61.7	NC_005337.1	+	74977	0.65	0.696099
	Target:  5'- aCGCGauaGCgGCCGGGuCGACCacguacacgaggcgGC-CGCCg -3' miRNA:   3'- cGCGCg--UG-CGGCCU-GCUGG--------------CGuGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	119013	0.65	0.696099
	Target:  5'- gGCGCGUcgccacaacguucgGCGCCGG-CG-CCGcCAgGaCCg -3' miRNA:   3'- -CGCGCG--------------UGCGGCCuGCuGGC-GUgC-GG- -5'
25949	3'	-61.7	NC_005337.1	+	128333	0.65	0.695137
	Target:  5'- aGCGCGacugcucgguccaACGCCGG-CGucuccCCGCucGCGCUc -3' miRNA:   3'- -CGCGCg------------UGCGGCCuGCu----GGCG--UGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	56857	0.66	0.69321
	Target:  5'- cGCGgGCcuCGCUGGGC--CCGCacauccacccccgcgGCGCCg -3' miRNA:   3'- -CGCgCGu-GCGGCCUGcuGGCG---------------UGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	123193	0.66	0.689352
	Target:  5'- aGCuGCGguCGCgGcGGCGACCGaucuGCgGCCu -3' miRNA:   3'- -CG-CGCguGCGgC-CUGCUGGCg---UG-CGG- -5'
25949	3'	-61.7	NC_005337.1	+	38772	0.66	0.689352
	Target:  5'- -gGUGCGCGgUGGA-GcCCGaCGCGCCc -3' miRNA:   3'- cgCGCGUGCgGCCUgCuGGC-GUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	67508	0.66	0.689352
	Target:  5'- ---aGCACGCCcaGCGGCCcGCGCGUg -3' miRNA:   3'- cgcgCGUGCGGccUGCUGG-CGUGCGg -5'
25949	3'	-61.7	NC_005337.1	+	49192	0.66	0.689352
	Target:  5'- cGUGCgGUACGuggccaaccaCCGGACgcuguacaagGACCuGCugGCCg -3' miRNA:   3'- -CGCG-CGUGC----------GGCCUG----------CUGG-CGugCGG- -5'
25949	3'	-61.7	NC_005337.1	+	22850	0.66	0.689352
	Target:  5'- cCGCuCGUGCUGGACcGCgGCGCGCUc -3' miRNA:   3'- cGCGcGUGCGGCCUGcUGgCGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	8863	0.66	0.689352
	Target:  5'- cUGaCGC-CGCCGuGcAUGACgGCACGCa -3' miRNA:   3'- cGC-GCGuGCGGC-C-UGCUGgCGUGCGg -5'
25949	3'	-61.7	NC_005337.1	+	116135	0.66	0.689352
	Target:  5'- -aGCuGCGCGCCuGGgGGCCGaacgaGCGCa -3' miRNA:   3'- cgCG-CGUGCGGcCUgCUGGCg----UGCGg -5'
25949	3'	-61.7	NC_005337.1	+	24521	0.66	0.689352
	Target:  5'- cCGCGgACGaccucgCGGACGuGCUGCGCaccGCCg -3' miRNA:   3'- cGCGCgUGCg-----GCCUGC-UGGCGUG---CGG- -5'
25949	3'	-61.7	NC_005337.1	+	34807	0.66	0.689352
	Target:  5'- uGCGCGU-CGCgGGugG-CCa-GCGCCu -3' miRNA:   3'- -CGCGCGuGCGgCCugCuGGcgUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	115006	0.66	0.689352
	Target:  5'- -gGCGCuCGCCaaaGGcuaccACGACgUGCugGCCa -3' miRNA:   3'- cgCGCGuGCGG---CC-----UGCUG-GCGugCGG- -5'
25949	3'	-61.7	NC_005337.1	+	10441	0.66	0.689352
	Target:  5'- nCGCGaACGCCgGGACGGa-GC-CGCCc -3' miRNA:   3'- cGCGCgUGCGG-CCUGCUggCGuGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	54045	0.66	0.689352
	Target:  5'- --aUGUACGCCGaccccgaccGCGugCGCGCGCUc -3' miRNA:   3'- cgcGCGUGCGGCc--------UGCugGCGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	64207	0.66	0.689352
	Target:  5'- uCGCGCACGaguucgCGGuccGCGACgGgcaGCGCCu -3' miRNA:   3'- cGCGCGUGCg-----GCC---UGCUGgCg--UGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	2399	0.66	0.689352
	Target:  5'- aCGCGCAgG-CGGaaGCGGUCGCACGUg -3' miRNA:   3'- cGCGCGUgCgGCC--UGCUGGCGUGCGg -5'
25949	3'	-61.7	NC_005337.1	+	77292	0.66	0.689352
	Target:  5'- uCGCGCACGUCGucC-AUCaCGCGCCg -3' miRNA:   3'- cGCGCGUGCGGCcuGcUGGcGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	7233	0.66	0.689352
	Target:  5'- gGUGCGCAC-CUccGCGcCCGC-CGCCa -3' miRNA:   3'- -CGCGCGUGcGGccUGCuGGCGuGCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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