miRNA display CGI

Results 21 - 40 of 901 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
25949	3'	-61.7	NC_005337.1	+	24521	0.66	0.689352
	Target:  5'- cCGCGgACGaccucgCGGACGuGCUGCGCaccGCCg -3' miRNA:   3'- cGCGCgUGCg-----GCCUGC-UGGCGUG---CGG- -5'
25949	3'	-61.7	NC_005337.1	+	54045	0.66	0.689352
	Target:  5'- --aUGUACGCCGaccccgaccGCGugCGCGCGCUc -3' miRNA:   3'- cgcGCGUGCGGCc--------UGCugGCGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	77292	0.66	0.689352
	Target:  5'- uCGCGCACGUCGucC-AUCaCGCGCCg -3' miRNA:   3'- cGCGCGUGCGGCcuGcUGGcGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	12182	0.66	0.689352
	Target:  5'- cGUGCGCGacgaGCUGGuCGAgcaCCGaGCGCUu -3' miRNA:   3'- -CGCGCGUg---CGGCCuGCU---GGCgUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	116135	0.66	0.689352
	Target:  5'- -aGCuGCGCGCCuGGgGGCCGaacgaGCGCa -3' miRNA:   3'- cgCG-CGUGCGGcCUgCUGGCg----UGCGg -5'
25949	3'	-61.7	NC_005337.1	+	49368	0.66	0.689352
	Target:  5'- uCGCGgAgGCgGcGACcGCCGCAcCGCCc -3' miRNA:   3'- cGCGCgUgCGgC-CUGcUGGCGU-GCGG- -5'
25949	3'	-61.7	NC_005337.1	+	115006	0.66	0.689352
	Target:  5'- -gGCGCuCGCCaaaGGcuaccACGACgUGCugGCCa -3' miRNA:   3'- cgCGCGuGCGG---CC-----UGCUG-GCGugCGG- -5'
25949	3'	-61.7	NC_005337.1	+	26414	0.66	0.688386
	Target:  5'- aCGUGCuCG-CGG-CGGCCGCgaucuucgucuccACGCCg -3' miRNA:   3'- cGCGCGuGCgGCCuGCUGGCG-------------UGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	10834	0.66	0.688386
	Target:  5'- gGCGCugcgGCGCGgaGGGCGAgacauugcagagcUCGCuCGCCg -3' miRNA:   3'- -CGCG----CGUGCggCCUGCU-------------GGCGuGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	10324	0.66	0.688386
	Target:  5'- uGUGCaGCGCGaCCGGcucGCGGggcguggggaacgUCGuCACGCCg -3' miRNA:   3'- -CGCG-CGUGC-GGCC---UGCU-------------GGC-GUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	15907	0.66	0.685487
	Target:  5'- -aGCaGgGCGCCGGaggcagaGCGACCGaagacggcgggcuuCAUGCCg -3' miRNA:   3'- cgCG-CgUGCGGCC-------UGCUGGC--------------GUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	92620	0.66	0.683551
	Target:  5'- cGCGCGCgucucagcgaucccgAuccacggagaCGCCGGGCG-UCGCACcacgGCCu -3' miRNA:   3'- -CGCGCG---------------U----------GCGGCCUGCuGGCGUG----CGG- -5'
25949	3'	-61.7	NC_005337.1	+	78644	0.66	0.682583
	Target:  5'- aGCGCgGUGgggcugaagaaggUGCCGGGCGugaAguugaacugcagcguCCGCACGCCg -3' miRNA:   3'- -CGCG-CGU-------------GCGGCCUGC---U---------------GGCGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	70598	0.66	0.679677
	Target:  5'- cGCGCcccCAUGCCGaGGCG-CCGU-UGCCu -3' miRNA:   3'- -CGCGc--GUGCGGC-CUGCuGGCGuGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	94648	0.66	0.679677
	Target:  5'- uGCGUGUACaugGCCcgcgaGACGAuCCGCuccCGCCc -3' miRNA:   3'- -CGCGCGUG---CGGc----CUGCU-GGCGu--GCGG- -5'
25949	3'	-61.7	NC_005337.1	+	97941	0.66	0.679677
	Target:  5'- cGCGCGgACGCucuaCGuGuuccCGACCuccuccguGCGCGCCa -3' miRNA:   3'- -CGCGCgUGCG----GC-Cu---GCUGG--------CGUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	57711	0.66	0.679677
	Target:  5'- -aGUGCGCGgUGcacGACGACCacaACGCCa -3' miRNA:   3'- cgCGCGUGCgGC---CUGCUGGcg-UGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	62525	0.66	0.679677
	Target:  5'- aUGCGCuCGCCcaccgacaGGcUGACCGuCGCGUCg -3' miRNA:   3'- cGCGCGuGCGG--------CCuGCUGGC-GUGCGG- -5'
25949	3'	-61.7	NC_005337.1	+	26700	0.66	0.679677
	Target:  5'- cGUGgacaGCACGCgGGcgaaGACCGCGgcguUGCCg -3' miRNA:   3'- -CGCg---CGUGCGgCCug--CUGGCGU----GCGG- -5'
25949	3'	-61.7	NC_005337.1	+	119334	0.66	0.679677
	Target:  5'- uGCGCG-GCGaCGGugGACacaGCG-GCCa -3' miRNA:   3'- -CGCGCgUGCgGCCugCUGg--CGUgCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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