miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25949 5' -45.6 NC_005337.1 + 1458 0.66 0.999969
Target:  5'- cGUGAaCGUcGCGGAuccguuGGCGUccGCGCGCc -3'
miRNA:   3'- -UACUaGUA-CGCUUuu----UUGUA--CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 126402 0.66 0.999969
Target:  5'- gGUGAUCAcgGCcAAGGccgcCcgGCGCGCg -3'
miRNA:   3'- -UACUAGUa-CGcUUUUuu--GuaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 65888 0.66 0.999969
Target:  5'- -cGGUCGccGUGAccGAGGACG-GCGUGCg -3'
miRNA:   3'- uaCUAGUa-CGCU--UUUUUGUaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 30869 0.66 0.999969
Target:  5'- -aGGUCAUcGCGggGAugucGCGcUGCagGCGCu -3'
miRNA:   3'- uaCUAGUA-CGCuuUUu---UGU-ACG--CGCG- -5'
25949 5' -45.6 NC_005337.1 + 23081 0.66 0.999965
Target:  5'- -cGGcCGUGCccggcauCGUGCGCGCg -3'
miRNA:   3'- uaCUaGUACGcuuuuuuGUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 86363 0.66 0.999963
Target:  5'- -cGGUCgGUGCGuuugguGACGgccgcguuuauccacUGCGCGCa -3'
miRNA:   3'- uaCUAG-UACGCuuuu--UUGU---------------ACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 103213 0.66 0.999958
Target:  5'- cGUGGacgccuUCGUGCu---GGACAUGCGuCGCc -3'
miRNA:   3'- -UACU------AGUACGcuuuUUUGUACGC-GCG- -5'
25949 5' -45.6 NC_005337.1 + 57168 0.66 0.999958
Target:  5'- -gGcgCGUGCuGcgGAGCAUGUGcCGCa -3'
miRNA:   3'- uaCuaGUACGcUuuUUUGUACGC-GCG- -5'
25949 5' -45.6 NC_005337.1 + 109784 0.66 0.999958
Target:  5'- -cGAccucgCGUGCGu----ACAUGaCGCGCa -3'
miRNA:   3'- uaCUa----GUACGCuuuuuUGUAC-GCGCG- -5'
25949 5' -45.6 NC_005337.1 + 66444 0.66 0.999958
Target:  5'- -cGGUCuucggacacCGAAAacgGAugAUGCGCGCg -3'
miRNA:   3'- uaCUAGuac------GCUUU---UUugUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 3475 0.66 0.999958
Target:  5'- -gGGUCGUcGCGAcuGcGCGUGCugGUGCa -3'
miRNA:   3'- uaCUAGUA-CGCUuuUuUGUACG--CGCG- -5'
25949 5' -45.6 NC_005337.1 + 3165 0.66 0.999958
Target:  5'- uGUGGUCGuUGaCGAu----CAUGUGUGCa -3'
miRNA:   3'- -UACUAGU-AC-GCUuuuuuGUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 11455 0.66 0.99995
Target:  5'- -cGAUCAcgcggacgcgcacgcUGCGGucGAugGccGCGCGCa -3'
miRNA:   3'- uaCUAGU---------------ACGCUuuUUugUa-CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 29516 0.66 0.999943
Target:  5'- ----cCGUGCGAGAu--CAUGCagucGCGCu -3'
miRNA:   3'- uacuaGUACGCUUUuuuGUACG----CGCG- -5'
25949 5' -45.6 NC_005337.1 + 48310 0.66 0.999943
Target:  5'- ----gCAUGCGGugc-GCggGCGCGCu -3'
miRNA:   3'- uacuaGUACGCUuuuuUGuaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 77615 0.66 0.999943
Target:  5'- -aGGUCAUGCucucguAGAGCAgcgaGUGCGUg -3'
miRNA:   3'- uaCUAGUACGcuu---UUUUGUa---CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 88344 0.66 0.999943
Target:  5'- -gGcgCGcGCGAGAAGACcgucuucuucGCGCGCa -3'
miRNA:   3'- uaCuaGUaCGCUUUUUUGua--------CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 18709 0.66 0.999943
Target:  5'- -cGGgccCcgGCGAGGAGcuGCG-GCGCGCu -3'
miRNA:   3'- uaCUa--GuaCGCUUUUU--UGUaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 50874 0.66 0.999943
Target:  5'- cUGAUaaaccGCGAGGAcaugguuuGGCggGCGCGCg -3'
miRNA:   3'- uACUAgua--CGCUUUU--------UUGuaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 3380 0.66 0.999943
Target:  5'- -cGuUCGUGgGcGAGAAGCGcGCGUGCg -3'
miRNA:   3'- uaCuAGUACgC-UUUUUUGUaCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.