Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25949 | 5' | -45.6 | NC_005337.1 | + | 77615 | 0.66 | 0.999943 |
Target: 5'- -aGGUCAUGCucucguAGAGCAgcgaGUGCGUg -3' miRNA: 3'- uaCUAGUACGcuu---UUUUGUa---CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 126402 | 0.66 | 0.999969 |
Target: 5'- gGUGAUCAcgGCcAAGGccgcCcgGCGCGCg -3' miRNA: 3'- -UACUAGUa-CGcUUUUuu--GuaCGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 23081 | 0.66 | 0.999965 |
Target: 5'- -cGGcCGUGCccggcauCGUGCGCGCg -3' miRNA: 3'- uaCUaGUACGcuuuuuuGUACGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 47317 | 0.66 | 0.999943 |
Target: 5'- cGUGGUCAUGUuc-GAGGC--GCGCGUg -3' miRNA: 3'- -UACUAGUACGcuuUUUUGuaCGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 3475 | 0.66 | 0.999958 |
Target: 5'- -gGGUCGUcGCGAcuGcGCGUGCugGUGCa -3' miRNA: 3'- uaCUAGUA-CGCUuuUuUGUACG--CGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 1458 | 0.66 | 0.999969 |
Target: 5'- cGUGAaCGUcGCGGAuccguuGGCGUccGCGCGCc -3' miRNA: 3'- -UACUaGUA-CGCUUuu----UUGUA--CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 31912 | 0.66 | 0.999924 |
Target: 5'- gAUGGUCucgGCGAAGGcGCuuUGCGCu- -3' miRNA: 3'- -UACUAGua-CGCUUUUuUGu-ACGCGcg -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 88344 | 0.66 | 0.999943 |
Target: 5'- -gGcgCGcGCGAGAAGACcgucuucuucGCGCGCa -3' miRNA: 3'- uaCuaGUaCGCUUUUUUGua--------CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 11455 | 0.66 | 0.99995 |
Target: 5'- -cGAUCAcgcggacgcgcacgcUGCGGucGAugGccGCGCGCa -3' miRNA: 3'- uaCUAGU---------------ACGCUuuUUugUa-CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 103213 | 0.66 | 0.999958 |
Target: 5'- cGUGGacgccuUCGUGCu---GGACAUGCGuCGCc -3' miRNA: 3'- -UACU------AGUACGcuuuUUUGUACGC-GCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 130140 | 0.66 | 0.999899 |
Target: 5'- cGUGGUCGcGCGcgcuGGCGcucGCGCGCu -3' miRNA: 3'- -UACUAGUaCGCuuuuUUGUa--CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 133567 | 0.66 | 0.999924 |
Target: 5'- -------cGCGGccgcGGGCGUGCGCGCg -3' miRNA: 3'- uacuaguaCGCUuu--UUUGUACGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 78067 | 0.66 | 0.999924 |
Target: 5'- -gGAUCAugccgcgcuccuUGCGguAGAGCuuguuccGCGCGCu -3' miRNA: 3'- uaCUAGU------------ACGCuuUUUUGua-----CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 89024 | 0.66 | 0.999943 |
Target: 5'- cUGcgCAaguaCGGAAcgcGCAUGCGCGCg -3' miRNA: 3'- uACuaGUac--GCUUUuu-UGUACGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 3165 | 0.66 | 0.999958 |
Target: 5'- uGUGGUCGuUGaCGAu----CAUGUGUGCa -3' miRNA: 3'- -UACUAGU-AC-GCUuuuuuGUACGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 48310 | 0.66 | 0.999943 |
Target: 5'- ----gCAUGCGGugc-GCggGCGCGCu -3' miRNA: 3'- uacuaGUACGCUuuuuUGuaCGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 131403 | 0.66 | 0.999907 |
Target: 5'- cGUGAUCGUGUucccgcug--GCGCGCg -3' miRNA: 3'- -UACUAGUACGcuuuuuuguaCGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 88790 | 0.66 | 0.999899 |
Target: 5'- -cGA-CGUGCGuccgGAGAGCGggcucGUGCGCa -3' miRNA: 3'- uaCUaGUACGCu---UUUUUGUa----CGCGCG- -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 118988 | 0.66 | 0.999922 |
Target: 5'- uGUGAUCGUcaugaugGUGAAGcggcGCAUGUGCGa -3' miRNA: 3'- -UACUAGUA-------CGCUUUuu--UGUACGCGCg -5' |
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25949 | 5' | -45.6 | NC_005337.1 | + | 44782 | 0.66 | 0.999899 |
Target: 5'- gGUGGUUuUGCGc---GACGUGCGCa- -3' miRNA: 3'- -UACUAGuACGCuuuuUUGUACGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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