miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25949 5' -45.6 NC_005337.1 + 10408 0.69 0.997931
Target:  5'- uGUGGagGUGCGGcugcgcccagGAGGACGccugcgcggcggUGCGCGCg -3'
miRNA:   3'- -UACUagUACGCU----------UUUUUGU------------ACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 69191 0.7 0.994781
Target:  5'- cGUGAgCGUGCuguacugcauGggGcgcacggacuuccaGAACGUGCGCGCg -3'
miRNA:   3'- -UACUaGUACG----------CuuU--------------UUUGUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 98455 0.7 0.995028
Target:  5'- -gGAUCGgccUGCG-----GCAUGCGUGCg -3'
miRNA:   3'- uaCUAGU---ACGCuuuuuUGUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 42378 0.7 0.995784
Target:  5'- cGUGA-CcgGCGAcccGGAGGCGccgcgGCGCGCg -3'
miRNA:   3'- -UACUaGuaCGCU---UUUUUGUa----CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 128663 0.7 0.996681
Target:  5'- -cGGUCGUGCaccGAGAcgcucgucccccgccGGGCAcGCGCGCu -3'
miRNA:   3'- uaCUAGUACG---CUUU---------------UUUGUaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 76111 0.7 0.997014
Target:  5'- --cAUCAUGCGcacgcGCuUGCGCGCg -3'
miRNA:   3'- uacUAGUACGCuuuuuUGuACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 95230 0.69 0.997507
Target:  5'- -cGGUCGcGCGAcuGGuccgugcacuCGUGCGCGCg -3'
miRNA:   3'- uaCUAGUaCGCUuuUUu---------GUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 62464 0.69 0.997931
Target:  5'- gAUGAUCAUGUcgaagcgguuGAAGAAcaugucguACAUGCuGUGCu -3'
miRNA:   3'- -UACUAGUACG----------CUUUUU--------UGUACG-CGCG- -5'
25949 5' -45.6 NC_005337.1 + 109903 0.69 0.997931
Target:  5'- ----aCGUGCGcguGGAAGACGUGuCGCGUg -3'
miRNA:   3'- uacuaGUACGC---UUUUUUGUAC-GCGCG- -5'
25949 5' -45.6 NC_005337.1 + 121986 0.71 0.993189
Target:  5'- --cAUCGUGCGc--GAGCuccUGCGCGCg -3'
miRNA:   3'- uacUAGUACGCuuuUUUGu--ACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 66626 0.71 0.993189
Target:  5'- -cGGUgGUGCu--GGAGCAcGCGCGCg -3'
miRNA:   3'- uaCUAgUACGcuuUUUUGUaCGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 77446 0.71 0.990841
Target:  5'- -aGggCAUGUGGAGGuucucgugguGGCGUGCGCGg -3'
miRNA:   3'- uaCuaGUACGCUUUU----------UUGUACGCGCg -5'
25949 5' -45.6 NC_005337.1 + 99629 0.83 0.582023
Target:  5'- cGUGcgCGUGCGGGAcacGGACGUGCGCGg -3'
miRNA:   3'- -UACuaGUACGCUUU---UUUGUACGCGCg -5'
25949 5' -45.6 NC_005337.1 + 56304 0.78 0.855226
Target:  5'- cUGAaCGUGCGGGAGAucaacgaguACAUGCGCGa -3'
miRNA:   3'- uACUaGUACGCUUUUU---------UGUACGCGCg -5'
25949 5' -45.6 NC_005337.1 + 14973 0.76 0.901921
Target:  5'- cAUGAUCAcgGCGAacGAGuuCAUGCGCaGCu -3'
miRNA:   3'- -UACUAGUa-CGCU--UUUuuGUACGCG-CG- -5'
25949 5' -45.6 NC_005337.1 + 56974 0.74 0.953019
Target:  5'- cAUGAUCcgGCGcgugauGGAcGACGUGCGCGa -3'
miRNA:   3'- -UACUAGuaCGC------UUUuUUGUACGCGCg -5'
25949 5' -45.6 NC_005337.1 + 126028 0.73 0.967775
Target:  5'- -cGcgCGUGCGugugucuCAUGCGCGCc -3'
miRNA:   3'- uaCuaGUACGCuuuuuu-GUACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 86374 0.73 0.977367
Target:  5'- -cGGUCuuGUGCGGGAAcauguccgccaGGCGgcUGCGCGCg -3'
miRNA:   3'- uaCUAG--UACGCUUUU-----------UUGU--ACGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 91101 0.73 0.97988
Target:  5'- -cGAUCAgcgGCGAGGuc-CGgucgGCGCGCa -3'
miRNA:   3'- uaCUAGUa--CGCUUUuuuGUa---CGCGCG- -5'
25949 5' -45.6 NC_005337.1 + 99683 0.72 0.987899
Target:  5'- cGUGG-CGUGCGAcAGcuucGACGcgcUGCGCGCg -3'
miRNA:   3'- -UACUaGUACGCUuUU----UUGU---ACGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.