miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25950 3' -60 NC_005337.1 + 6419 0.66 0.707174
Target:  5'- cAUGCCCGUGaGGcAGAUgUGGAGCGg -3'
miRNA:   3'- uUGCGGGCGCaCC-UCUGgGCCUUGUa -5'
25950 3' -60 NC_005337.1 + 103251 0.66 0.697209
Target:  5'- cGCGCCCGCGcGGuGGCCCa------ -3'
miRNA:   3'- uUGCGGGCGCaCCuCUGGGccuugua -5'
25950 3' -60 NC_005337.1 + 4112 0.66 0.687191
Target:  5'- -cCGCgCGCGcGGAGACgCGcGGACAg -3'
miRNA:   3'- uuGCGgGCGCaCCUCUGgGC-CUUGUa -5'
25950 3' -60 NC_005337.1 + 99683 0.66 0.687191
Target:  5'- --gGCCUggGCGUGGuGGACCCGGcGACc- -3'
miRNA:   3'- uugCGGG--CGCACC-UCUGGGCC-UUGua -5'
25950 3' -60 NC_005337.1 + 24043 0.66 0.687191
Target:  5'- cACGCCCgGCGUGGAGuuCCUcauGGAGa-- -3'
miRNA:   3'- uUGCGGG-CGCACCUCu-GGG---CCUUgua -5'
25950 3' -60 NC_005337.1 + 122498 0.66 0.677128
Target:  5'- -cCGUCCGUcUGGGuGACCCGGAGa-- -3'
miRNA:   3'- uuGCGGGCGcACCU-CUGGGCCUUgua -5'
25950 3' -60 NC_005337.1 + 12599 0.66 0.666016
Target:  5'- uGGCGCCCGCGcGGAugagcagguccacGACCuCGGGGg-- -3'
miRNA:   3'- -UUGCGGGCGCaCCU-------------CUGG-GCCUUgua -5'
25950 3' -60 NC_005337.1 + 52661 0.66 0.6569
Target:  5'- cGACGCCUGCcUGauGGGGCUgCGGAACGUg -3'
miRNA:   3'- -UUGCGGGCGcAC--CUCUGG-GCCUUGUA- -5'
25950 3' -60 NC_005337.1 + 85123 0.66 0.6569
Target:  5'- uGACGCCCGCcgacuuGAGGuCCUGGGGCGc -3'
miRNA:   3'- -UUGCGGGCGcac---CUCU-GGGCCUUGUa -5'
25950 3' -60 NC_005337.1 + 30355 0.67 0.646753
Target:  5'- cAGC-CCCGCGgacaGGAGcACgCGGAGCAc -3'
miRNA:   3'- -UUGcGGGCGCa---CCUC-UGgGCCUUGUa -5'
25950 3' -60 NC_005337.1 + 23167 0.67 0.635578
Target:  5'- -cUGaCCCGCGUGGAGgcgcugcuggacgGCCUGGcGCAc -3'
miRNA:   3'- uuGC-GGGCGCACCUC-------------UGGGCCuUGUa -5'
25950 3' -60 NC_005337.1 + 52027 0.67 0.626432
Target:  5'- cGCGCgCGCGgucaUGGAGuuCCGGGACc- -3'
miRNA:   3'- uUGCGgGCGC----ACCUCugGGCCUUGua -5'
25950 3' -60 NC_005337.1 + 122869 0.67 0.626432
Target:  5'- cGCGCCUGCGgaacccGGGGcCCUGGcGCAUc -3'
miRNA:   3'- uUGCGGGCGCa-----CCUCuGGGCCuUGUA- -5'
25950 3' -60 NC_005337.1 + 54084 0.67 0.626432
Target:  5'- cAGCGCCCGCGgcaGGAGcgcguccgcGCgCCGGcACGg -3'
miRNA:   3'- -UUGCGGGCGCa--CCUC---------UG-GGCCuUGUa -5'
25950 3' -60 NC_005337.1 + 73263 0.67 0.625416
Target:  5'- aGGCGUacucggaCCGCGaGGAGGCCCGcAGCAUc -3'
miRNA:   3'- -UUGCG-------GGCGCaCCUCUGGGCcUUGUA- -5'
25950 3' -60 NC_005337.1 + 49537 0.67 0.622368
Target:  5'- cGCGCgCGCG-GGAGACCagcuccggcgccgGGAACAc -3'
miRNA:   3'- uUGCGgGCGCaCCUCUGGg------------CCUUGUa -5'
25950 3' -60 NC_005337.1 + 12081 0.67 0.616275
Target:  5'- cGCGCCCGCGgcgauGAGGCgCGGGcACGc -3'
miRNA:   3'- uUGCGGGCGCac---CUCUGgGCCU-UGUa -5'
25950 3' -60 NC_005337.1 + 38189 0.67 0.606129
Target:  5'- cGCGCCCGCGUGccccguGuACgCCGGAGCc- -3'
miRNA:   3'- uUGCGGGCGCACcu----C-UG-GGCCUUGua -5'
25950 3' -60 NC_005337.1 + 48158 0.67 0.596002
Target:  5'- gGACGagcCCCGCGagugcUGG-GACCCGGAguGCGUc -3'
miRNA:   3'- -UUGC---GGGCGC-----ACCuCUGGGCCU--UGUA- -5'
25950 3' -60 NC_005337.1 + 71433 0.68 0.575833
Target:  5'- uGCGCCUGCugGUGGAGugguUCCGGAAg-- -3'
miRNA:   3'- uUGCGGGCG--CACCUCu---GGGCCUUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.