miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25950 5' -61.3 NC_005337.1 + 124238 0.66 0.705995
Target:  5'- --uGGGgCGGCGCcugcguggagGUCCCCGaGGACa -3'
miRNA:   3'- gcuCCCgGCUGUG----------UAGGGGCgCCUGc -5'
25950 5' -61.3 NC_005337.1 + 104305 0.66 0.705995
Target:  5'- gCGAGGGCgCGGCgGCG-CUCUGCGuGCGu -3'
miRNA:   3'- -GCUCCCG-GCUG-UGUaGGGGCGCcUGC- -5'
25950 5' -61.3 NC_005337.1 + 60071 0.66 0.705995
Target:  5'- gGuGGuGCgCGACccugugcuGCAUCuCCUGCGGACa -3'
miRNA:   3'- gCuCC-CG-GCUG--------UGUAG-GGGCGCCUGc -5'
25950 5' -61.3 NC_005337.1 + 126199 0.66 0.705995
Target:  5'- --uGuGCCGucGCGCGUCCUCGCGGucGCGg -3'
miRNA:   3'- gcuCcCGGC--UGUGUAGGGGCGCC--UGC- -5'
25950 5' -61.3 NC_005337.1 + 24506 0.66 0.696354
Target:  5'- gCGAGGucguccacaccGCgGACGa--CCUCGCGGACGu -3'
miRNA:   3'- -GCUCC-----------CGgCUGUguaGGGGCGCCUGC- -5'
25950 5' -61.3 NC_005337.1 + 103587 0.66 0.696354
Target:  5'- gCGAcGGGUaCGugGCcUCCUCGCuGGugGg -3'
miRNA:   3'- -GCU-CCCG-GCugUGuAGGGGCG-CCugC- -5'
25950 5' -61.3 NC_005337.1 + 29210 0.66 0.696354
Target:  5'- gGAGGcGCUG-CGCAgcgCCgCGCGGcCGg -3'
miRNA:   3'- gCUCC-CGGCuGUGUa--GGgGCGCCuGC- -5'
25950 5' -61.3 NC_005337.1 + 4785 0.66 0.696354
Target:  5'- gCGcGGGuCCGuGCACGcCCCCGUGaGGCa -3'
miRNA:   3'- -GCuCCC-GGC-UGUGUaGGGGCGC-CUGc -5'
25950 5' -61.3 NC_005337.1 + 52191 0.66 0.695387
Target:  5'- aGAcGGCCGAcCGCGUccgcuacaucacgCCCCG-GGACGu -3'
miRNA:   3'- gCUcCCGGCU-GUGUA-------------GGGGCgCCUGC- -5'
25950 5' -61.3 NC_005337.1 + 66023 0.66 0.686664
Target:  5'- uGuGGGCCauGCACGUCCUcuuCGUGGAgGa -3'
miRNA:   3'- gCuCCCGGc-UGUGUAGGG---GCGCCUgC- -5'
25950 5' -61.3 NC_005337.1 + 78365 0.66 0.686664
Target:  5'- gGuGGGCagcguGACGCugaggCCCuCGCGGAUGc -3'
miRNA:   3'- gCuCCCGg----CUGUGua---GGG-GCGCCUGC- -5'
25950 5' -61.3 NC_005337.1 + 124849 0.66 0.686664
Target:  5'- ---cGGCuCGuACACGUCCUCGUGGAUc -3'
miRNA:   3'- gcucCCG-GC-UGUGUAGGGGCGCCUGc -5'
25950 5' -61.3 NC_005337.1 + 80238 0.66 0.686664
Target:  5'- -cGGGGUCGGCguACAUCUCCaGCGG-Ca -3'
miRNA:   3'- gcUCCCGGCUG--UGUAGGGG-CGCCuGc -5'
25950 5' -61.3 NC_005337.1 + 124572 0.66 0.685693
Target:  5'- gCGA-GGCCGcguccaaGCGCuaCCCUGCGGGCa -3'
miRNA:   3'- -GCUcCCGGC-------UGUGuaGGGGCGCCUGc -5'
25950 5' -61.3 NC_005337.1 + 6248 0.66 0.676932
Target:  5'- aCGGccuuGGCCGACuCGUCUgCGCGGAg- -3'
miRNA:   3'- -GCUc---CCGGCUGuGUAGGgGCGCCUgc -5'
25950 5' -61.3 NC_005337.1 + 66327 0.66 0.676932
Target:  5'- uCGcGGGCuggCGACACGUgCUCGUGGAgCGc -3'
miRNA:   3'- -GCuCCCG---GCUGUGUAgGGGCGCCU-GC- -5'
25950 5' -61.3 NC_005337.1 + 82383 0.66 0.676932
Target:  5'- cCGAGGGCCucguCGuCGgggagCCCCGC-GACGa -3'
miRNA:   3'- -GCUCCCGGcu--GU-GUa----GGGGCGcCUGC- -5'
25950 5' -61.3 NC_005337.1 + 49257 0.66 0.675957
Target:  5'- gCGAGGGCUcgcuggugGACAUcgugcagggcgugAUCUCCGCGaACGg -3'
miRNA:   3'- -GCUCCCGG--------CUGUG-------------UAGGGGCGCcUGC- -5'
25950 5' -61.3 NC_005337.1 + 25032 0.66 0.667167
Target:  5'- uGAGGcGCCGucgcCACGggcccUCCUCGCaGACGu -3'
miRNA:   3'- gCUCC-CGGCu---GUGU-----AGGGGCGcCUGC- -5'
25950 5' -61.3 NC_005337.1 + 111205 0.66 0.667167
Target:  5'- cCGGGcacGGCCGcCGCGUUCCgGCGcGCGg -3'
miRNA:   3'- -GCUC---CCGGCuGUGUAGGGgCGCcUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.