miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 3' -53.2 NC_005337.1 + 108651 0.66 0.964619
Target:  5'- gGCGgGCgACCGCGCGGacgaaaccgUGUcCUUcCGCa -3'
miRNA:   3'- gCGCaCG-UGGCGUGCU---------ACAuGAA-GCG- -5'
25951 3' -53.2 NC_005337.1 + 87821 0.66 0.964619
Target:  5'- uCGCGgcGCGCCGCGCGc---AgaUCGCg -3'
miRNA:   3'- -GCGCa-CGUGGCGUGCuacaUgaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 133577 0.66 0.964619
Target:  5'- gGCGUGC---GCGCGA---GCUUCGCc -3'
miRNA:   3'- gCGCACGuggCGUGCUacaUGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 133577 0.66 0.964619
Target:  5'- gGCGUGC---GCGCGA---GCUUCGCc -3'
miRNA:   3'- gCGCACGuggCGUGCUacaUGAAGCG- -5'
25951 3' -53.2 NC_005337.1 + 88883 0.66 0.964619
Target:  5'- aGCGUcaGCACCGgGuCGGUGguc-UCGCa -3'
miRNA:   3'- gCGCA--CGUGGCgU-GCUACaugaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 84955 0.66 0.964282
Target:  5'- cCGCGUGU--CGCugGAUGgcCUccagguaUCGCc -3'
miRNA:   3'- -GCGCACGugGCGugCUACauGA-------AGCG- -5'
25951 3' -53.2 NC_005337.1 + 127987 0.66 0.963603
Target:  5'- uGCGcUGCaacgccgacacgacGCUGCugGAcGUGCUcCGCg -3'
miRNA:   3'- gCGC-ACG--------------UGGCGugCUaCAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 102017 0.66 0.961154
Target:  5'- -uCGUGCAgCGCGCGGgcGUGa-UCGCg -3'
miRNA:   3'- gcGCACGUgGCGUGCUa-CAUgaAGCG- -5'
25951 3' -53.2 NC_005337.1 + 87289 0.66 0.961154
Target:  5'- -uCGUGCGgUGCGCGAUcgGCUcguucUCGCa -3'
miRNA:   3'- gcGCACGUgGCGUGCUAcaUGA-----AGCG- -5'
25951 3' -53.2 NC_005337.1 + 57169 0.66 0.961154
Target:  5'- gCGCGUGCugCGgaGC-AUGUGC--CGCa -3'
miRNA:   3'- -GCGCACGugGCg-UGcUACAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 29078 0.66 0.961154
Target:  5'- aGUGUGUACgCGCGCGGaaaagGUAggaaUCGCa -3'
miRNA:   3'- gCGCACGUG-GCGUGCUa----CAUga--AGCG- -5'
25951 3' -53.2 NC_005337.1 + 77649 0.66 0.961154
Target:  5'- aGCGUGC-CCGUgcGCGAgGU-CU-CGCa -3'
miRNA:   3'- gCGCACGuGGCG--UGCUaCAuGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 65705 0.66 0.961154
Target:  5'- --gGUGCacaGCCGCACGcgGUGgggCGCg -3'
miRNA:   3'- gcgCACG---UGGCGUGCuaCAUgaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 66310 0.66 0.961154
Target:  5'- cCGCGUgaGCGCCGCggucgcgggcugGCGAcacGUGCU-CGUg -3'
miRNA:   3'- -GCGCA--CGUGGCG------------UGCUa--CAUGAaGCG- -5'
25951 3' -53.2 NC_005337.1 + 40049 0.66 0.961154
Target:  5'- uCGCgGUGCGCCGaacCGGggaccgGUACcgCGCg -3'
miRNA:   3'- -GCG-CACGUGGCgu-GCUa-----CAUGaaGCG- -5'
25951 3' -53.2 NC_005337.1 + 78230 0.66 0.961154
Target:  5'- aGCGUGUccacgaACCGCACGcccUGcACgUUCGUg -3'
miRNA:   3'- gCGCACG------UGGCGUGCu--ACaUG-AAGCG- -5'
25951 3' -53.2 NC_005337.1 + 128722 0.66 0.959704
Target:  5'- gCGCGUGUACCGCGagccgcuCUggagCGCg -3'
miRNA:   3'- -GCGCACGUGGCGUgcuacauGAa---GCG- -5'
25951 3' -53.2 NC_005337.1 + 76570 0.66 0.959336
Target:  5'- uCGuCGUGCACCGCGCacucgguGAUGgggaucuugaacuUGCUcaccuugcccuuguUCGCg -3'
miRNA:   3'- -GC-GCACGUGGCGUG-------CUAC-------------AUGA--------------AGCG- -5'
25951 3' -53.2 NC_005337.1 + 81390 0.66 0.958965
Target:  5'- uCGgGgaacggGCACCGCcacuucaggcuggagGCGAUGgGCUUCaGCa -3'
miRNA:   3'- -GCgCa-----CGUGGCG---------------UGCUACaUGAAG-CG- -5'
25951 3' -53.2 NC_005337.1 + 16038 0.66 0.958965
Target:  5'- gGCGUcuccucgggcuccgcGCACUGCAUGAUGacgucgggcgGCUcCGCg -3'
miRNA:   3'- gCGCA---------------CGUGGCGUGCUACa---------UGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.