miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 63926 0.66 0.572488
Target:  5'- gCGGCGGcGCAcCGcCGUGCGGaaCGCCg-- -3'
miRNA:   3'- -GCCGCU-CGU-GCaGCACGCC--GCGGgca -5'
25951 5' -63.1 NC_005337.1 + 127783 0.66 0.572488
Target:  5'- ---gGAGCGCGUgGUGCGgGUGCUgGUg -3'
miRNA:   3'- gccgCUCGUGCAgCACGC-CGCGGgCA- -5'
25951 5' -63.1 NC_005337.1 + 83901 0.66 0.572488
Target:  5'- cCGcCGGGUACGggg-GCGGCGCCUGc -3'
miRNA:   3'- -GCcGCUCGUGCagcaCGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 106212 0.66 0.572488
Target:  5'- uGGaGAGCACGUUGUuuuucuccaugGCGGCGgUCGc -3'
miRNA:   3'- gCCgCUCGUGCAGCA-----------CGCCGCgGGCa -5'
25951 5' -63.1 NC_005337.1 + 127535 0.66 0.572488
Target:  5'- uGGCGAuGUACGguaCcUGcCGGCGcCCCGUg -3'
miRNA:   3'- gCCGCU-CGUGCa--GcAC-GCCGC-GGGCA- -5'
25951 5' -63.1 NC_005337.1 + 71835 0.66 0.572488
Target:  5'- cCGGCagcGGCGCGUcaaCGUGUGGUGCaCGa -3'
miRNA:   3'- -GCCGc--UCGUGCA---GCACGCCGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 2624 0.66 0.570557
Target:  5'- gCGGCGcGCACGggcuccucgaagCGgaagGUGGCGCCgGc -3'
miRNA:   3'- -GCCGCuCGUGCa-----------GCa---CGCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 94843 0.66 0.562851
Target:  5'- --cCGAGCGCGgccCGaGCgGGCGCCCGc -3'
miRNA:   3'- gccGCUCGUGCa--GCaCG-CCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 34384 0.66 0.562851
Target:  5'- gCGGCGAGCcagaGgagCGUgGCGGUGCuCCa- -3'
miRNA:   3'- -GCCGCUCGug--Ca--GCA-CGCCGCG-GGca -5'
25951 5' -63.1 NC_005337.1 + 91467 0.66 0.562851
Target:  5'- gGGCGAGCACGauccCGUgcuucGCGGCGgacucagguauCUCGUa -3'
miRNA:   3'- gCCGCUCGUGCa---GCA-----CGCCGC-----------GGGCA- -5'
25951 5' -63.1 NC_005337.1 + 31052 0.66 0.562851
Target:  5'- gCGGCGAcGCAUGUCcaGCacgaaGGCGUCCa- -3'
miRNA:   3'- -GCCGCU-CGUGCAGcaCG-----CCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 38309 0.66 0.553257
Target:  5'- gGGCGcGCGCGUCGaGCGcaacgaccgacGCGUCUGg -3'
miRNA:   3'- gCCGCuCGUGCAGCaCGC-----------CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 41736 0.66 0.553257
Target:  5'- aGGCGAGCucgcgcaccGCGUCcaUGgGGCGgCCGc -3'
miRNA:   3'- gCCGCUCG---------UGCAGc-ACgCCGCgGGCa -5'
25951 5' -63.1 NC_005337.1 + 104304 0.66 0.553257
Target:  5'- -cGCGAGgGCG-CG-GCGGCGCUCu- -3'
miRNA:   3'- gcCGCUCgUGCaGCaCGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 2069 0.66 0.553257
Target:  5'- aGGCGAGCGUGUCc-GCGagcGCGCUCGa -3'
miRNA:   3'- gCCGCUCGUGCAGcaCGC---CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 70343 0.67 0.547524
Target:  5'- aCGGCGuuccGCACGgcgGUGCGccgccgcacguggucGCGUCCGUa -3'
miRNA:   3'- -GCCGCu---CGUGCag-CACGC---------------CGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 45511 0.67 0.543713
Target:  5'- aGGCcucCACGUCgGUGuCGGCGCCgCGg -3'
miRNA:   3'- gCCGcucGUGCAG-CAC-GCCGCGG-GCa -5'
25951 5' -63.1 NC_005337.1 + 91014 0.67 0.543713
Target:  5'- uGGCGcugaggaacAGCGCGUCa-GCGGUGCUCa- -3'
miRNA:   3'- gCCGC---------UCGUGCAGcaCGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 15581 0.67 0.543713
Target:  5'- aGGCgGAGC-CGUCGUaGUGGaaCCCGUc -3'
miRNA:   3'- gCCG-CUCGuGCAGCA-CGCCgcGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 117804 0.67 0.543713
Target:  5'- -aGUGGGCAUGaaCGgcGUGGCGCCCGg -3'
miRNA:   3'- gcCGCUCGUGCa-GCa-CGCCGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.