miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25952 3' -59.7 NC_005337.1 + 62609 0.66 0.722397
Target:  5'- cGCcGCC-GUGCaCCCgcgcguugaagUGCgCGGCCAGGc -3'
miRNA:   3'- uCGaCGGuUACG-GGG-----------ACG-GCUGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 13791 0.66 0.722397
Target:  5'- gGGCgucGCCGgacacgugggcgAUGCCCCggacGCaGAUCAGGa -3'
miRNA:   3'- -UCGa--CGGU------------UACGGGGa---CGgCUGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 133614 0.66 0.712553
Target:  5'- cGCUGCUGcUGCaggaggucaCCgucGCCGugCAGGa -3'
miRNA:   3'- uCGACGGUuACGg--------GGa--CGGCugGUCC- -5'
25952 3' -59.7 NC_005337.1 + 133614 0.66 0.712553
Target:  5'- cGCUGCUGcUGCaggaggucaCCgucGCCGugCAGGa -3'
miRNA:   3'- uCGACGGUuACGg--------GGa--CGGCugGUCC- -5'
25952 3' -59.7 NC_005337.1 + 1953 0.66 0.712553
Target:  5'- uGCUcuggGCCAGcGCCCCcuccGCCGccgugcacGCCGGGu -3'
miRNA:   3'- uCGA----CGGUUaCGGGGa---CGGC--------UGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 50272 0.66 0.702642
Target:  5'- aAGC-GCCAguGUGCCCCgUGCaGGCCcAGa -3'
miRNA:   3'- -UCGaCGGU--UACGGGG-ACGgCUGG-UCc -5'
25952 3' -59.7 NC_005337.1 + 125783 0.66 0.702642
Target:  5'- aAGC-GCCAucguAUuCCCC-GCCGugCGGGg -3'
miRNA:   3'- -UCGaCGGU----UAcGGGGaCGGCugGUCC- -5'
25952 3' -59.7 NC_005337.1 + 56232 0.66 0.692673
Target:  5'- gGGCggaucgUGCCcAUGUCgCCgGCCGACgAGGc -3'
miRNA:   3'- -UCG------ACGGuUACGG-GGaCGGCUGgUCC- -5'
25952 3' -59.7 NC_005337.1 + 31188 0.66 0.692673
Target:  5'- uGUcgGCCGAcgaGCCCCaGgUGACCAGGc -3'
miRNA:   3'- uCGa-CGGUUa--CGGGGaCgGCUGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 103690 0.66 0.692673
Target:  5'- cAGCUG-CAAUGCCuCCUGgcgcaCGGCCuccacGGGg -3'
miRNA:   3'- -UCGACgGUUACGG-GGACg----GCUGG-----UCC- -5'
25952 3' -59.7 NC_005337.1 + 131272 0.66 0.682654
Target:  5'- cGCUGCCGGaGCCCgU-CCG-CCAGu -3'
miRNA:   3'- uCGACGGUUaCGGGgAcGGCuGGUCc -5'
25952 3' -59.7 NC_005337.1 + 34655 0.67 0.672594
Target:  5'- cGCUcaucuucacGCUGGUGCUCUcGCCGuCCAGGc -3'
miRNA:   3'- uCGA---------CGGUUACGGGGaCGGCuGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 128244 0.67 0.672594
Target:  5'- gGGCUGCgCAcgGCCCUgcuggcGCCcGCCcGGu -3'
miRNA:   3'- -UCGACG-GUuaCGGGGa-----CGGcUGGuCC- -5'
25952 3' -59.7 NC_005337.1 + 122728 0.67 0.672594
Target:  5'- cGCUGCUgucccuGGUGCCCgUgauccgcacGCCGACCGcguGGa -3'
miRNA:   3'- uCGACGG------UUACGGGgA---------CGGCUGGU---CC- -5'
25952 3' -59.7 NC_005337.1 + 43935 0.67 0.662502
Target:  5'- cGCUgGCCGcUGCUCgUGaCCacgGACCAGGa -3'
miRNA:   3'- uCGA-CGGUuACGGGgAC-GG---CUGGUCC- -5'
25952 3' -59.7 NC_005337.1 + 71855 0.67 0.662502
Target:  5'- gAGgUGCCcg-GCaUCCUGCCGcACCAGc -3'
miRNA:   3'- -UCgACGGuuaCG-GGGACGGC-UGGUCc -5'
25952 3' -59.7 NC_005337.1 + 85660 0.67 0.662502
Target:  5'- cGCUGCgGAUGCUCUUGUacaucgCGuuCAGGg -3'
miRNA:   3'- uCGACGgUUACGGGGACG------GCugGUCC- -5'
25952 3' -59.7 NC_005337.1 + 83332 0.67 0.662502
Target:  5'- gGGCgcgGCgCGAggcGCCCCgggagGCCGACUGGc -3'
miRNA:   3'- -UCGa--CG-GUUa--CGGGGa----CGGCUGGUCc -5'
25952 3' -59.7 NC_005337.1 + 39504 0.67 0.662502
Target:  5'- uGCUGCUggUGaaCCCCaccGCgGGCCAGc -3'
miRNA:   3'- uCGACGGuuAC--GGGGa--CGgCUGGUCc -5'
25952 3' -59.7 NC_005337.1 + 92470 0.67 0.662502
Target:  5'- cGCgaagGUC-AUGCCCgagGCCGACCuGGu -3'
miRNA:   3'- uCGa---CGGuUACGGGga-CGGCUGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.