miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25952 5' -57.5 NC_005337.1 + 38518 0.68 0.690795
Target:  5'- uCGCCgCGAUCGCGGGGAuCGUgcacgGcGGGAa -3'
miRNA:   3'- -GUGG-GCUAGUGUCCCU-GCGa----C-CUCUg -5'
25952 5' -57.5 NC_005337.1 + 15901 0.69 0.680683
Target:  5'- uGCCCca--GCAGGG-CGCcGGAGGCa -3'
miRNA:   3'- gUGGGcuagUGUCCCuGCGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 74886 0.69 0.660348
Target:  5'- gCGCCCGAcCGa--GGACGCcGGGGGCg -3'
miRNA:   3'- -GUGGGCUaGUgucCCUGCGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 13823 0.69 0.650142
Target:  5'- gCGCUCGAgcgcgcccCGCAGGGACuCgGGGGGCg -3'
miRNA:   3'- -GUGGGCUa-------GUGUCCCUGcGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 49620 0.69 0.650142
Target:  5'- gACCaGAUCACGcGGACGUugucgcugaUGGAGACc -3'
miRNA:   3'- gUGGgCUAGUGUcCCUGCG---------ACCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 49926 0.69 0.650142
Target:  5'- gGCgCGAgCGCGGGGACagcacgaccagGCUGGAGGu -3'
miRNA:   3'- gUGgGCUaGUGUCCCUG-----------CGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 82178 0.69 0.650142
Target:  5'- -uCCCGGUCGCGccGAgGCUGGAGGa -3'
miRNA:   3'- guGGGCUAGUGUccCUgCGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 60220 0.69 0.629696
Target:  5'- gGCuuGggCGCGGGGGCugggGCUGGGGuCg -3'
miRNA:   3'- gUGggCuaGUGUCCCUG----CGACCUCuG- -5'
25952 5' -57.5 NC_005337.1 + 96215 0.7 0.609257
Target:  5'- gACCCGGUCACguGGGaGACGaugaUGGuGAUg -3'
miRNA:   3'- gUGGGCUAGUG--UCC-CUGCg---ACCuCUG- -5'
25952 5' -57.5 NC_005337.1 + 132304 0.7 0.59906
Target:  5'- gACCCGGcgugCACGGcGGCGgaGGGGGCg -3'
miRNA:   3'- gUGGGCUa---GUGUCcCUGCgaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 87322 0.7 0.59906
Target:  5'- cCACgCUGAcCACGuGGugGCUGGAGAg -3'
miRNA:   3'- -GUG-GGCUaGUGUcCCugCGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 130092 0.72 0.480404
Target:  5'- cCACCCGGUgAUGGaGGACGCcgucaUGGaAGACg -3'
miRNA:   3'- -GUGGGCUAgUGUC-CCUGCG-----ACC-UCUG- -5'
25952 5' -57.5 NC_005337.1 + 38971 0.72 0.480404
Target:  5'- gCGCCCGAgugcgcgugcgUCACcggccGGGCGCUGGGGAa -3'
miRNA:   3'- -GUGGGCU-----------AGUGuc---CCUGCGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 50375 0.73 0.425424
Target:  5'- gGCCCGggCACGGGcgccuGGCGC-GGGGGCg -3'
miRNA:   3'- gUGGGCuaGUGUCC-----CUGCGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 83312 0.75 0.32763
Target:  5'- cCGCCCGGUCGaccggcUAGGGGCGCggcGcGAGGCg -3'
miRNA:   3'- -GUGGGCUAGU------GUCCCUGCGa--C-CUCUG- -5'
25952 5' -57.5 NC_005337.1 + 124103 1.09 0.00166
Target:  5'- gCACCCGAUCACAGGGACGCUGGAGACg -3'
miRNA:   3'- -GUGGGCUAGUGUCCCUGCGACCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.