miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25952 5' -57.5 NC_005337.1 + 718 0.66 0.805732
Target:  5'- aCGCCCGcggcCGCGGGGuACGCggGcGAGAg -3'
miRNA:   3'- -GUGGGCua--GUGUCCC-UGCGa-C-CUCUg -5'
25952 5' -57.5 NC_005337.1 + 718 0.66 0.805732
Target:  5'- aCGCCCGcggcCGCGGGGuACGCggGcGAGAg -3'
miRNA:   3'- -GUGGGCua--GUGUCCC-UGCGa-C-CUCUg -5'
25952 5' -57.5 NC_005337.1 + 3454 0.66 0.8307
Target:  5'- cCGCCUGAUCACGGcGGCaCUGGGucgucgcGACu -3'
miRNA:   3'- -GUGGGCUAGUGUCcCUGcGACCU-------CUG- -5'
25952 5' -57.5 NC_005337.1 + 5840 0.66 0.839783
Target:  5'- gUACCCGGccgccCGCGGGGACccccuGgUGGGGAg -3'
miRNA:   3'- -GUGGGCUa----GUGUCCCUG-----CgACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 11936 0.67 0.763507
Target:  5'- gCACCCGggCGCgcgccgucgAGGGACgcgcauaucgcgucaGCgGGGGACa -3'
miRNA:   3'- -GUGGGCuaGUG---------UCCCUG---------------CGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 12241 0.68 0.740443
Target:  5'- gCACUCGG-CACcgacGGGGAUGgaGGAGAa -3'
miRNA:   3'- -GUGGGCUaGUG----UCCCUGCgaCCUCUg -5'
25952 5' -57.5 NC_005337.1 + 13823 0.69 0.650142
Target:  5'- gCGCUCGAgcgcgcccCGCAGGGACuCgGGGGGCg -3'
miRNA:   3'- -GUGGGCUa-------GUGUCCCUGcGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 15901 0.69 0.680683
Target:  5'- uGCCCca--GCAGGG-CGCcGGAGGCa -3'
miRNA:   3'- gUGGGcuagUGUCCCuGCGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 18044 0.66 0.838967
Target:  5'- aCACCCGAuuauuguacaUCGCAaacuGGGcgcacacGCGCUGGcAGAg -3'
miRNA:   3'- -GUGGGCU----------AGUGU----CCC-------UGCGACC-UCUg -5'
25952 5' -57.5 NC_005337.1 + 33331 0.67 0.750126
Target:  5'- gACuuGAUC-CAGGGcuUGCUGGGGuCg -3'
miRNA:   3'- gUGggCUAGuGUCCCu-GCGACCUCuG- -5'
25952 5' -57.5 NC_005337.1 + 38518 0.68 0.690795
Target:  5'- uCGCCgCGAUCGCGGGGAuCGUgcacgGcGGGAa -3'
miRNA:   3'- -GUGG-GCUAGUGUCCCU-GCGa----C-CUCUg -5'
25952 5' -57.5 NC_005337.1 + 38971 0.72 0.480404
Target:  5'- gCGCCCGAgugcgcgugcgUCACcggccGGGCGCUGGGGAa -3'
miRNA:   3'- -GUGGGCU-----------AGUGuc---CCUGCGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 42538 0.66 0.831535
Target:  5'- cCGCCgGAcgCGCuGcGGGCGCUGGugcGGCu -3'
miRNA:   3'- -GUGGgCUa-GUGuC-CCUGCGACCu--CUG- -5'
25952 5' -57.5 NC_005337.1 + 48408 0.66 0.814501
Target:  5'- uGCCCGAUCGCgcccgacauGGcGGACGC-GGAcgugcuGGCg -3'
miRNA:   3'- gUGGGCUAGUG---------UC-CCUGCGaCCU------CUG- -5'
25952 5' -57.5 NC_005337.1 + 49620 0.69 0.650142
Target:  5'- gACCaGAUCACGcGGACGUugucgcugaUGGAGACc -3'
miRNA:   3'- gUGGgCUAGUGUcCCUGCG---------ACCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 49926 0.69 0.650142
Target:  5'- gGCgCGAgCGCGGGGACagcacgaccagGCUGGAGGu -3'
miRNA:   3'- gUGgGCUaGUGUCCCUG-----------CGACCUCUg -5'
25952 5' -57.5 NC_005337.1 + 50375 0.73 0.425424
Target:  5'- gGCCCGggCACGGGcgccuGGCGC-GGGGGCg -3'
miRNA:   3'- gUGGGCuaGUGUCC-----CUGCGaCCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 51511 0.66 0.813631
Target:  5'- gCACCCGAUCAucauggcgcucuuCGGcgugcggcugccGGGC-CUGGAGGCc -3'
miRNA:   3'- -GUGGGCUAGU-------------GUC------------CCUGcGACCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 60165 0.66 0.800395
Target:  5'- cCACCCGGUCACGuggaucacguGGucacccugcgggugcGGCGCggggGGGGACn -3'
miRNA:   3'- -GUGGGCUAGUGU----------CC---------------CUGCGa---CCUCUG- -5'
25952 5' -57.5 NC_005337.1 + 60220 0.69 0.629696
Target:  5'- gGCuuGggCGCGGGGGCugggGCUGGGGuCg -3'
miRNA:   3'- gUGggCuaGUGUCCCUG----CGACCUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.