miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25953 3' -55.6 NC_005337.1 + 127582 0.66 0.910197
Target:  5'- aGGCGGGcGCagCCguggACGUCGCCGaGUCg -3'
miRNA:   3'- -UCGCUCaUGa-GGa---UGCGGUGGUgCAG- -5'
25953 3' -55.6 NC_005337.1 + 7965 0.66 0.910197
Target:  5'- gGGUGAGgggUUCCgUugGCCACUGCG-Cg -3'
miRNA:   3'- -UCGCUCau-GAGG-AugCGGUGGUGCaG- -5'
25953 3' -55.6 NC_005337.1 + 43618 0.66 0.910197
Target:  5'- aAGC-AGccGCUCCgagaucaGCGCCGCCGCG-Cg -3'
miRNA:   3'- -UCGcUCa-UGAGGa------UGCGGUGGUGCaG- -5'
25953 3' -55.6 NC_005337.1 + 20139 0.66 0.910197
Target:  5'- cGGCGaAGgcgcGCUCC-ACGCUGCCGCa-- -3'
miRNA:   3'- -UCGC-UCa---UGAGGaUGCGGUGGUGcag -5'
25953 3' -55.6 NC_005337.1 + 1435 0.66 0.910197
Target:  5'- uGCGAGcgcgGCggcgCCgaggUGCGCgACCACGUa -3'
miRNA:   3'- uCGCUCa---UGa---GG----AUGCGgUGGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 70116 0.66 0.910197
Target:  5'- cGCGcau-CUCCU-CGCCGCCcucCGUCa -3'
miRNA:   3'- uCGCucauGAGGAuGCGGUGGu--GCAG- -5'
25953 3' -55.6 NC_005337.1 + 109391 0.66 0.909586
Target:  5'- cGCGGGUcuggcguGCcgUCCacagacacggcgUGCGCgACCACGUCc -3'
miRNA:   3'- uCGCUCA-------UG--AGG------------AUGCGgUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 14510 0.66 0.903978
Target:  5'- uGCGAG-GCUCUacCGCacaCACCACGUUu -3'
miRNA:   3'- uCGCUCaUGAGGauGCG---GUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 80257 0.66 0.900132
Target:  5'- cAGCGGcaggagcucgaucuuGgGCUCCUcgcgcaGCGCCACCAgGUg -3'
miRNA:   3'- -UCGCU---------------CaUGAGGA------UGCGGUGGUgCAg -5'
25953 3' -55.6 NC_005337.1 + 132927 0.66 0.89752
Target:  5'- cGCGAGcGCggaguucaaCUAcCGCCGCCGCGg- -3'
miRNA:   3'- uCGCUCaUGag-------GAU-GCGGUGGUGCag -5'
25953 3' -55.6 NC_005337.1 + 96989 0.66 0.89752
Target:  5'- gGGCG-GUGCgUCUACGUCACCcugcaccugGCGUg -3'
miRNA:   3'- -UCGCuCAUGaGGAUGCGGUGG---------UGCAg -5'
25953 3' -55.6 NC_005337.1 + 83986 0.66 0.89752
Target:  5'- gGGCGGGcACgUCUGgGCCugCACGg- -3'
miRNA:   3'- -UCGCUCaUGaGGAUgCGGugGUGCag -5'
25953 3' -55.6 NC_005337.1 + 90925 0.66 0.89752
Target:  5'- cAGCGGcGUcUUCCcgGCgGCCAgCGCGUCg -3'
miRNA:   3'- -UCGCU-CAuGAGGa-UG-CGGUgGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 7314 0.66 0.89752
Target:  5'- uGGCGuGUAC-CCgcacACGUCGCgCGCGUUc -3'
miRNA:   3'- -UCGCuCAUGaGGa---UGCGGUG-GUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 127477 0.66 0.89752
Target:  5'- gGGcCGGGgcCUCCgUACaCCACCGCGg- -3'
miRNA:   3'- -UC-GCUCauGAGG-AUGcGGUGGUGCag -5'
25953 3' -55.6 NC_005337.1 + 60483 0.66 0.89752
Target:  5'- gAGCGuGaGCUCgUGCGgCugCACGgUCa -3'
miRNA:   3'- -UCGCuCaUGAGgAUGCgGugGUGC-AG- -5'
25953 3' -55.6 NC_005337.1 + 50795 0.66 0.89752
Target:  5'- uGCGGGccuCUCCcuggauUGCgACCACGUCc -3'
miRNA:   3'- uCGCUCau-GAGGau----GCGgUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 53036 0.66 0.89752
Target:  5'- uGCGGGaGCUgCCgGCGCaacgGCCugGUCu -3'
miRNA:   3'- uCGCUCaUGA-GGaUGCGg---UGGugCAG- -5'
25953 3' -55.6 NC_005337.1 + 3055 0.66 0.89752
Target:  5'- cAGCGcAGcagcgGCUUCUugGCCAucuCCACGg- -3'
miRNA:   3'- -UCGC-UCa----UGAGGAugCGGU---GGUGCag -5'
25953 3' -55.6 NC_005337.1 + 23718 0.66 0.89752
Target:  5'- cGCGG--ACaUCCUGacCGCCGCCGCGg- -3'
miRNA:   3'- uCGCUcaUG-AGGAU--GCGGUGGUGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.