miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25953 3' -55.6 NC_005337.1 + 1398 0.68 0.803
Target:  5'- gAGCGuuUGCUCgUcgGCGaUCACCACGUUg -3'
miRNA:   3'- -UCGCucAUGAGgA--UGC-GGUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 1435 0.66 0.910197
Target:  5'- uGCGAGcgcgGCggcgCCgaggUGCGCgACCACGUa -3'
miRNA:   3'- uCGCUCa---UGa---GG----AUGCGgUGGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 1656 0.71 0.624057
Target:  5'- cGGCGAcGaGCUUggcCGCCGCCGCGUCg -3'
miRNA:   3'- -UCGCU-CaUGAGgauGCGGUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 3022 0.69 0.726571
Target:  5'- cAGCGcGUGCgcgCCgaugUGCGCgACCACGUa -3'
miRNA:   3'- -UCGCuCAUGa--GG----AUGCGgUGGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 3055 0.66 0.89752
Target:  5'- cAGCGcAGcagcgGCUUCUugGCCAucuCCACGg- -3'
miRNA:   3'- -UCGC-UCa----UGAGGAugCGGU---GGUGCag -5'
25953 3' -55.6 NC_005337.1 + 3387 0.68 0.784661
Target:  5'- gGGCGAGaaGCgcgCgUGCGCCAUCugGUa -3'
miRNA:   3'- -UCGCUCa-UGa--GgAUGCGGUGGugCAg -5'
25953 3' -55.6 NC_005337.1 + 4367 0.66 0.876738
Target:  5'- cGGCGGuGUugUUgUACccgGCCGCCAUGUg -3'
miRNA:   3'- -UCGCU-CAugAGgAUG---CGGUGGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 4477 0.71 0.634422
Target:  5'- cGGCaGGUGCUCUgcauCGCCAgCACGUg -3'
miRNA:   3'- -UCGcUCAUGAGGau--GCGGUgGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 5564 0.67 0.853944
Target:  5'- cGCG-GUACacgcGCGCCAgCCGCGUCg -3'
miRNA:   3'- uCGCuCAUGaggaUGCGGU-GGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 5762 0.67 0.845925
Target:  5'- cGGCGGGcgGCagCC-GCGCgACCACGUa -3'
miRNA:   3'- -UCGCUCa-UGa-GGaUGCGgUGGUGCAg -5'
25953 3' -55.6 NC_005337.1 + 7314 0.66 0.89752
Target:  5'- uGGCGuGUAC-CCgcacACGUCGCgCGCGUUc -3'
miRNA:   3'- -UCGCuCAUGaGGa---UGCGGUG-GUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 7965 0.66 0.910197
Target:  5'- gGGUGAGgggUUCCgUugGCCACUGCG-Cg -3'
miRNA:   3'- -UCGCUCau-GAGG-AugCGGUGGUGCaG- -5'
25953 3' -55.6 NC_005337.1 + 9954 0.67 0.869356
Target:  5'- cGCGuccauGaGCgCCUGCGCCgcgacgagGCCGCGUCc -3'
miRNA:   3'- uCGCu----CaUGaGGAUGCGG--------UGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 11256 0.68 0.803
Target:  5'- uAGUGGGUGCcgUCCaugUugGCCACCguuACGUg -3'
miRNA:   3'- -UCGCUCAUG--AGG---AugCGGUGG---UGCAg -5'
25953 3' -55.6 NC_005337.1 + 14510 0.66 0.903978
Target:  5'- uGCGAG-GCUCUacCGCacaCACCACGUUu -3'
miRNA:   3'- uCGCUCaUGAGGauGCG---GUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 16973 0.68 0.784661
Target:  5'- cGCG-GUGUUCgCgUACGCgACCACGUCg -3'
miRNA:   3'- uCGCuCAUGAG-G-AUGCGgUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 17009 0.71 0.624057
Target:  5'- gGGCGGGgccucgACgUCCaGCGCgCACUGCGUCg -3'
miRNA:   3'- -UCGCUCa-----UG-AGGaUGCG-GUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 17109 0.69 0.775275
Target:  5'- cGCGAGUGCgcCCggcagaacuCGCCGCCGuCGUg -3'
miRNA:   3'- uCGCUCAUGa-GGau-------GCGGUGGU-GCAg -5'
25953 3' -55.6 NC_005337.1 + 17521 0.74 0.482856
Target:  5'- cGGCGcaGGUGCUCCUucaucagcCGCuuCACCACGUCc -3'
miRNA:   3'- -UCGC--UCAUGAGGAu-------GCG--GUGGUGCAG- -5'
25953 3' -55.6 NC_005337.1 + 18693 0.67 0.845925
Target:  5'- cAGCGAGUacacGCUCagacACGCgGCCA-GUCg -3'
miRNA:   3'- -UCGCUCA----UGAGga--UGCGgUGGUgCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.