miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25953 5' -56.8 NC_005337.1 + 133456 0.66 0.892947
Target:  5'- cGGGC-CCGcGCGcGCgGACGGCUCCgcGGa -3'
miRNA:   3'- uCCUGaGGC-UGU-CG-CUGCUGAGGa-CC- -5'
25953 5' -56.8 NC_005337.1 + 6196 0.66 0.892947
Target:  5'- cGGGuCUCgGGC-GCGGCGACUgCaugUGGu -3'
miRNA:   3'- -UCCuGAGgCUGuCGCUGCUGAgG---ACC- -5'
25953 5' -56.8 NC_005337.1 + 133456 0.66 0.892947
Target:  5'- cGGGC-CCGcGCGcGCgGACGGCUCCgcGGa -3'
miRNA:   3'- uCCUGaGGC-UGU-CG-CUGCUGAGGa-CC- -5'
25953 5' -56.8 NC_005337.1 + 74453 0.66 0.892947
Target:  5'- uGGugUaccCCGGCGGguuCGACGuCUCgCUGGa -3'
miRNA:   3'- uCCugA---GGCUGUC---GCUGCuGAG-GACC- -5'
25953 5' -56.8 NC_005337.1 + 13842 0.66 0.886246
Target:  5'- aGGGACUCgGGgGGCGugagcucCGcCUCCgGGa -3'
miRNA:   3'- -UCCUGAGgCUgUCGCu------GCuGAGGaCC- -5'
25953 5' -56.8 NC_005337.1 + 100665 0.66 0.886246
Target:  5'- aAGGAC-CCGGCGuccGCGACGguGCUCg-GGc -3'
miRNA:   3'- -UCCUGaGGCUGU---CGCUGC--UGAGgaCC- -5'
25953 5' -56.8 NC_005337.1 + 126779 0.66 0.886246
Target:  5'- uGGAgaCCGGCAGCcccGugGA--CCUGGa -3'
miRNA:   3'- uCCUgaGGCUGUCG---CugCUgaGGACC- -5'
25953 5' -56.8 NC_005337.1 + 66074 0.66 0.886246
Target:  5'- cGGGC-CCG-CAGCGGCGcCcCCgGGg -3'
miRNA:   3'- uCCUGaGGCuGUCGCUGCuGaGGaCC- -5'
25953 5' -56.8 NC_005337.1 + 89701 0.66 0.885564
Target:  5'- aGGGACUUgGACAGCuccACGaagacccgguaccGCUCCaGGa -3'
miRNA:   3'- -UCCUGAGgCUGUCGc--UGC-------------UGAGGaCC- -5'
25953 5' -56.8 NC_005337.1 + 109242 0.66 0.879325
Target:  5'- gAGGGC-CCG-UGGCGACGGCgCCUc- -3'
miRNA:   3'- -UCCUGaGGCuGUCGCUGCUGaGGAcc -5'
25953 5' -56.8 NC_005337.1 + 36342 0.66 0.879325
Target:  5'- aGGGACacaCCGcCaucacgcccacgGGCGGCGGCcCCUGGc -3'
miRNA:   3'- -UCCUGa--GGCuG------------UCGCUGCUGaGGACC- -5'
25953 5' -56.8 NC_005337.1 + 29650 0.66 0.879325
Target:  5'- cGGGCUCCGAgAuGCG-CGuGCUCCcgcggUGGc -3'
miRNA:   3'- uCCUGAGGCUgU-CGCuGC-UGAGG-----ACC- -5'
25953 5' -56.8 NC_005337.1 + 1058 0.66 0.879325
Target:  5'- cGGGAggCCGGCGGgGGCGgACUgCgGGa -3'
miRNA:   3'- -UCCUgaGGCUGUCgCUGC-UGAgGaCC- -5'
25953 5' -56.8 NC_005337.1 + 1058 0.66 0.879325
Target:  5'- cGGGAggCCGGCGGgGGCGgACUgCgGGa -3'
miRNA:   3'- -UCCUgaGGCUGUCgCUGC-UGAgGaCC- -5'
25953 5' -56.8 NC_005337.1 + 41833 0.66 0.879325
Target:  5'- cAGGugUCCGGCuccuccucgucgGGCGggaGCGgGCUCgUGGc -3'
miRNA:   3'- -UCCugAGGCUG------------UCGC---UGC-UGAGgACC- -5'
25953 5' -56.8 NC_005337.1 + 6869 0.66 0.879325
Target:  5'- gAGGuACUCguaGAgGGCGGCGcucGC-CCUGGa -3'
miRNA:   3'- -UCC-UGAGg--CUgUCGCUGC---UGaGGACC- -5'
25953 5' -56.8 NC_005337.1 + 68274 0.66 0.872189
Target:  5'- gAGGACUUCGACGucuGCGGcCGGCcggcggCgUGGa -3'
miRNA:   3'- -UCCUGAGGCUGU---CGCU-GCUGa-----GgACC- -5'
25953 5' -56.8 NC_005337.1 + 128756 0.66 0.864841
Target:  5'- cAGaGCUCCGcCGGCGcGCGAa-CCUGGu -3'
miRNA:   3'- -UCcUGAGGCuGUCGC-UGCUgaGGACC- -5'
25953 5' -56.8 NC_005337.1 + 108741 0.66 0.864841
Target:  5'- cGGAUUCucgCGGC-GCGugGGCcgcugCCUGGa -3'
miRNA:   3'- uCCUGAG---GCUGuCGCugCUGa----GGACC- -5'
25953 5' -56.8 NC_005337.1 + 59629 0.66 0.864841
Target:  5'- aAGGuCUCCccgGGCAGCGGCGcC-CCgccgGGg -3'
miRNA:   3'- -UCCuGAGG---CUGUCGCUGCuGaGGa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.