miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25953 5' -56.8 NC_005337.1 + 94740 0.68 0.76259
Target:  5'- cGGGGCgCCGGCAGCcACGACcgcgagCUGGc -3'
miRNA:   3'- -UCCUGaGGCUGUCGcUGCUGag----GACC- -5'
25953 5' -56.8 NC_005337.1 + 30776 0.7 0.674442
Target:  5'- gAGGGCUCCGGuCA-CGACGGCgUCCa-- -3'
miRNA:   3'- -UCCUGAGGCU-GUcGCUGCUG-AGGacc -5'
25953 5' -56.8 NC_005337.1 + 101537 0.69 0.704444
Target:  5'- uGGACgugaccgCCGcCAGCGugGACUuCCUcaaGGa -3'
miRNA:   3'- uCCUGa------GGCuGUCGCugCUGA-GGA---CC- -5'
25953 5' -56.8 NC_005337.1 + 85780 0.69 0.724161
Target:  5'- cGGACUUcaCGACGGCGucaGACUUCaGGa -3'
miRNA:   3'- uCCUGAG--GCUGUCGCug-CUGAGGaCC- -5'
25953 5' -56.8 NC_005337.1 + 29593 0.69 0.724161
Target:  5'- cGGugUCCGACGcggacGCcauGACGAC-CUUGGg -3'
miRNA:   3'- uCCugAGGCUGU-----CG---CUGCUGaGGACC- -5'
25953 5' -56.8 NC_005337.1 + 43707 0.69 0.733907
Target:  5'- cGGACcggCCGACGaCGGCGACUUCgccgaGGa -3'
miRNA:   3'- uCCUGa--GGCUGUcGCUGCUGAGGa----CC- -5'
25953 5' -56.8 NC_005337.1 + 69658 0.69 0.733907
Target:  5'- gAGGACUUCGugGCGGCGcuggAgGACcucaUCCUGGa -3'
miRNA:   3'- -UCCUGAGGC--UGUCGC----UgCUG----AGGACC- -5'
25953 5' -56.8 NC_005337.1 + 27556 0.69 0.743567
Target:  5'- cGGACaugaacgucUCCGGCAGCGACaGCUUgUGc -3'
miRNA:   3'- uCCUG---------AGGCUGUCGCUGcUGAGgACc -5'
25953 5' -56.8 NC_005337.1 + 123640 0.69 0.753131
Target:  5'- uGGAgCUCUG-CAGCGgcGCGACggucgUCCUGGc -3'
miRNA:   3'- uCCU-GAGGCuGUCGC--UGCUG-----AGGACC- -5'
25953 5' -56.8 NC_005337.1 + 28444 0.7 0.673436
Target:  5'- uGGACUCCuuCA-CGACGauguacuugucgaGCUCCUGGa -3'
miRNA:   3'- uCCUGAGGcuGUcGCUGC-------------UGAGGACC- -5'
25953 5' -56.8 NC_005337.1 + 3077 0.7 0.663353
Target:  5'- cGGACUCCGcgcaccuCGGCGacggccaGCGACUCCg-- -3'
miRNA:   3'- uCCUGAGGCu------GUCGC-------UGCUGAGGacc -5'
25953 5' -56.8 NC_005337.1 + 51705 0.7 0.663353
Target:  5'- uGGcCUgCGACGGCGACGcgcugaugaucgaGCUgCCUGGc -3'
miRNA:   3'- uCCuGAgGCUGUCGCUGC-------------UGA-GGACC- -5'
25953 5' -56.8 NC_005337.1 + 83840 0.73 0.504693
Target:  5'- cGGGuCUCCagcacCGGCGACGACUCUgGGg -3'
miRNA:   3'- -UCCuGAGGcu---GUCGCUGCUGAGGaCC- -5'
25953 5' -56.8 NC_005337.1 + 99123 0.73 0.504693
Target:  5'- --cACUCCGcCAGCGACGcgaUCCUGGc -3'
miRNA:   3'- uccUGAGGCuGUCGCUGCug-AGGACC- -5'
25953 5' -56.8 NC_005337.1 + 50444 0.72 0.533784
Target:  5'- cGGGAUUCgGGCGGCG-CGugUuguCCUGGc -3'
miRNA:   3'- -UCCUGAGgCUGUCGCuGCugA---GGACC- -5'
25953 5' -56.8 NC_005337.1 + 38908 0.72 0.553506
Target:  5'- uGGGCUUCGuCGGCacGACGGCUCCccGGu -3'
miRNA:   3'- uCCUGAGGCuGUCG--CUGCUGAGGa-CC- -5'
25953 5' -56.8 NC_005337.1 + 66877 0.71 0.623869
Target:  5'- uGGACUUCGGCAaCGGCG-CggaCCUGGa -3'
miRNA:   3'- uCCUGAGGCUGUcGCUGCuGa--GGACC- -5'
25953 5' -56.8 NC_005337.1 + 45375 0.71 0.623869
Target:  5'- cAGGACUUCcuggagGACGGCgcgugGACGAagaUCCUGGa -3'
miRNA:   3'- -UCCUGAGG------CUGUCG-----CUGCUg--AGGACC- -5'
25953 5' -56.8 NC_005337.1 + 3012 0.7 0.644135
Target:  5'- cGGGCUCCGGCAGCG-CGuGCgcgCCg-- -3'
miRNA:   3'- uCCUGAGGCUGUCGCuGC-UGa--GGacc -5'
25953 5' -56.8 NC_005337.1 + 55626 0.7 0.654257
Target:  5'- -cGACUUCGACGGCGACGAggaaUGGa -3'
miRNA:   3'- ucCUGAGGCUGUCGCUGCUgaggACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.