miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25954 3' -54.2 NC_005337.1 + 93655 0.66 0.96216
Target:  5'- aGuCGcgGCCGGCcgCGGCGuaCCAGUa -3'
miRNA:   3'- gCuGCuaUGGCUGuaGCUGC--GGUCGc -5'
25954 3' -54.2 NC_005337.1 + 76233 0.66 0.96216
Target:  5'- uGGCGAgcacGCCGcCGUCGAagaGCgCGGCc -3'
miRNA:   3'- gCUGCUa---UGGCuGUAGCUg--CG-GUCGc -5'
25954 3' -54.2 NC_005337.1 + 38497 0.66 0.96216
Target:  5'- uCGcCGAgcugGCCGACGaCGuCGCC-GCGa -3'
miRNA:   3'- -GCuGCUa---UGGCUGUaGCuGCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 122983 0.66 0.96216
Target:  5'- gCGugGAgacCCGgaACAUgGGCGUgGGCGa -3'
miRNA:   3'- -GCugCUau-GGC--UGUAgCUGCGgUCGC- -5'
25954 3' -54.2 NC_005337.1 + 16674 0.66 0.96216
Target:  5'- aGACGAgggUCGACAgcaucUCG-CGCaCGGCGg -3'
miRNA:   3'- gCUGCUau-GGCUGU-----AGCuGCG-GUCGC- -5'
25954 3' -54.2 NC_005337.1 + 115059 0.66 0.96216
Target:  5'- aCGugGAcGCCGuCAcggaCGACGUCuGCGu -3'
miRNA:   3'- -GCugCUaUGGCuGUa---GCUGCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 63373 0.66 0.96216
Target:  5'- aGACGAUcACCGuCuuggUGGCGCCgcagAGCGc -3'
miRNA:   3'- gCUGCUA-UGGCuGua--GCUGCGG----UCGC- -5'
25954 3' -54.2 NC_005337.1 + 18816 0.66 0.96216
Target:  5'- -uGCGAguacGCCagcGCGUCGuACGCCGGCu -3'
miRNA:   3'- gcUGCUa---UGGc--UGUAGC-UGCGGUCGc -5'
25954 3' -54.2 NC_005337.1 + 132123 0.66 0.96216
Target:  5'- ---gGGUGCCGACGUgaACGCCcggGGCGu -3'
miRNA:   3'- gcugCUAUGGCUGUAgcUGCGG---UCGC- -5'
25954 3' -54.2 NC_005337.1 + 46222 0.66 0.96216
Target:  5'- cCGACGAgcacgUACgCGAUcagCGugGCgAGCGu -3'
miRNA:   3'- -GCUGCU-----AUG-GCUGua-GCugCGgUCGC- -5'
25954 3' -54.2 NC_005337.1 + 39195 0.66 0.96216
Target:  5'- uCGACGAUcCCGccuucgugcACAUCGGCGggGGCa -3'
miRNA:   3'- -GCUGCUAuGGC---------UGUAGCUGCggUCGc -5'
25954 3' -54.2 NC_005337.1 + 119245 0.66 0.961813
Target:  5'- uCGGaGAUGCCGcugucgcacaugaACAaacugCGGCGCCGGCu -3'
miRNA:   3'- -GCUgCUAUGGC-------------UGUa----GCUGCGGUCGc -5'
25954 3' -54.2 NC_005337.1 + 53927 0.66 0.961813
Target:  5'- gGACGGUGCgGcCAUCGgggaguucugcucGCGCCuGUGc -3'
miRNA:   3'- gCUGCUAUGgCuGUAGC-------------UGCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 38725 0.66 0.961112
Target:  5'- uGACGGgggacACCGGCGUCGGCaagaccucgcagguGCCcaAGCu -3'
miRNA:   3'- gCUGCUa----UGGCUGUAGCUG--------------CGG--UCGc -5'
25954 3' -54.2 NC_005337.1 + 133503 0.66 0.960758
Target:  5'- uCGGCGGcgcgcagcacaugGCCGcCGUCGAgGCC-GCGg -3'
miRNA:   3'- -GCUGCUa------------UGGCuGUAGCUgCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 133503 0.66 0.960758
Target:  5'- uCGGCGGcgcgcagcacaugGCCGcCGUCGAgGCC-GCGg -3'
miRNA:   3'- -GCUGCUa------------UGGCuGUAGCUgCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 58345 0.66 0.960044
Target:  5'- aCGACGAgACCGugGccgcgcucuUCGcggacuucgcgcgcaACGUCGGCGg -3'
miRNA:   3'- -GCUGCUaUGGCugU---------AGC---------------UGCGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 38954 0.66 0.958588
Target:  5'- gCGACGcgcACCGA--UCGGCGCCcgaguGCGc -3'
miRNA:   3'- -GCUGCua-UGGCUguAGCUGCGGu----CGC- -5'
25954 3' -54.2 NC_005337.1 + 15476 0.66 0.958588
Target:  5'- cCGACGGcgcgcgcgGCaCGACGgcgcCGcCGCCGGCGu -3'
miRNA:   3'- -GCUGCUa-------UG-GCUGUa---GCuGCGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 38367 0.66 0.958588
Target:  5'- -cGCGcgGCCGcCGUCGcCGCgAGCa -3'
miRNA:   3'- gcUGCuaUGGCuGUAGCuGCGgUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.