miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25954 3' -54.2 NC_005337.1 + 39509 0.66 0.946068
Target:  5'- cCGGCGGUGCUGGUGUCcACGCCcuaccuggaguccAGCGu -3'
miRNA:   3'- -GCUGCUAUGGCUGUAGcUGCGG-------------UCGC- -5'
25954 3' -54.2 NC_005337.1 + 131075 0.66 0.954791
Target:  5'- gCGACGA-GCgCGAguUCGugGUCuGCGc -3'
miRNA:   3'- -GCUGCUaUG-GCUguAGCugCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 132123 0.66 0.96216
Target:  5'- ---gGGUGCCGACGUgaACGCCcggGGCGu -3'
miRNA:   3'- gcugCUAUGGCUGUAgcUGCGG---UCGC- -5'
25954 3' -54.2 NC_005337.1 + 55966 0.66 0.942012
Target:  5'- aCGugGAcAgCGACcucGUCGugGCUAuGCGg -3'
miRNA:   3'- -GCugCUaUgGCUG---UAGCugCGGU-CGC- -5'
25954 3' -54.2 NC_005337.1 + 35160 0.66 0.958219
Target:  5'- gCGACGA-GCCGGCucgCGAgGCUaucgacgAGCGu -3'
miRNA:   3'- -GCUGCUaUGGCUGua-GCUgCGG-------UCGC- -5'
25954 3' -54.2 NC_005337.1 + 125107 0.66 0.954791
Target:  5'- gGACccaGAcGCUGACGaCGAgGCUAGCGa -3'
miRNA:   3'- gCUG---CUaUGGCUGUaGCUgCGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 129612 0.66 0.942012
Target:  5'- cCGugGAgcucguCCGGCGgcUCGugGCCGcCGg -3'
miRNA:   3'- -GCugCUau----GGCUGU--AGCugCGGUcGC- -5'
25954 3' -54.2 NC_005337.1 + 28654 0.66 0.942012
Target:  5'- cCGACGGUgcagaacggcacGCCGGCccCGACcUCGGCGa -3'
miRNA:   3'- -GCUGCUA------------UGGCUGuaGCUGcGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 939 0.66 0.950765
Target:  5'- gCGGCGGagcGCgGACAUgcUGGCGgCGGCGg -3'
miRNA:   3'- -GCUGCUa--UGgCUGUA--GCUGCgGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 77145 0.66 0.942012
Target:  5'- aCGGCGuccagGCUGGCggCGACcacgggguacuGCCGGCGc -3'
miRNA:   3'- -GCUGCua---UGGCUGuaGCUG-----------CGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 16018 0.66 0.953209
Target:  5'- -cGCGcgGCCGGCAgguacacgcgcugCGGCGCCuGCc -3'
miRNA:   3'- gcUGCuaUGGCUGUa------------GCUGCGGuCGc -5'
25954 3' -54.2 NC_005337.1 + 51900 0.66 0.954791
Target:  5'- aCGACGAgGCCc---UCGGCGCCGuGCa -3'
miRNA:   3'- -GCUGCUaUGGcuguAGCUGCGGU-CGc -5'
25954 3' -54.2 NC_005337.1 + 99181 0.66 0.950765
Target:  5'- gGACGAUGCgcguCGAgAUCcGCGCCGGa- -3'
miRNA:   3'- gCUGCUAUG----GCUgUAGcUGCGGUCgc -5'
25954 3' -54.2 NC_005337.1 + 77380 0.66 0.946507
Target:  5'- -cGCGGUGCCGcaACAccagcCGGCGCC-GCGg -3'
miRNA:   3'- gcUGCUAUGGC--UGUa----GCUGCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 3726 0.66 0.946507
Target:  5'- aGcCGAUcCCGuCGUUGACGUUGGCGc -3'
miRNA:   3'- gCuGCUAuGGCuGUAGCUGCGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 126254 0.66 0.942012
Target:  5'- cCGugGAccUGCUGAg--CGACGCC-GCGa -3'
miRNA:   3'- -GCugCU--AUGGCUguaGCUGCGGuCGC- -5'
25954 3' -54.2 NC_005337.1 + 14652 0.66 0.942012
Target:  5'- aGGCGuccuCCGGCAUCaGCG-CGGCGa -3'
miRNA:   3'- gCUGCuau-GGCUGUAGcUGCgGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 131395 0.66 0.942012
Target:  5'- -cGCGggGCCGugAUCGuguuccCGCUGGCGc -3'
miRNA:   3'- gcUGCuaUGGCugUAGCu-----GCGGUCGC- -5'
25954 3' -54.2 NC_005337.1 + 121655 0.66 0.942012
Target:  5'- gCGGCGAcccCCGAgGUCGugGaCCuGCu -3'
miRNA:   3'- -GCUGCUau-GGCUgUAGCugC-GGuCGc -5'
25954 3' -54.2 NC_005337.1 + 15229 0.66 0.946507
Target:  5'- gCGAgGAggucgaACCGGuCcuggCGGCGCCGGCGc -3'
miRNA:   3'- -GCUgCUa-----UGGCU-Gua--GCUGCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.