miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25954 5' -58.1 NC_005337.1 + 108605 0.66 0.817818
Target:  5'- -cCGCCuuCGAGggccgcgGCGCCGAgGUGGa -3'
miRNA:   3'- gaGCGGucGCUCa------UGCGGUUgCGCCa -5'
25954 5' -58.1 NC_005337.1 + 2187 0.66 0.817818
Target:  5'- -gCGCaCGGCGcAGgcggcggACGCgGGCGCGGc -3'
miRNA:   3'- gaGCG-GUCGC-UCa------UGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 49067 0.66 0.817818
Target:  5'- uUCGCCu---GGUACGCCAG-GCGGa -3'
miRNA:   3'- gAGCGGucgcUCAUGCGGUUgCGCCa -5'
25954 5' -58.1 NC_005337.1 + 84973 0.66 0.817818
Target:  5'- gCUCGCC-GCG-GUACGUgAucccguuCGCGGa -3'
miRNA:   3'- -GAGCGGuCGCuCAUGCGgUu------GCGCCa -5'
25954 5' -58.1 NC_005337.1 + 76230 0.66 0.817818
Target:  5'- --gGUUGGCGAGcACGCCGccgucgaagaGCGCGGc -3'
miRNA:   3'- gagCGGUCGCUCaUGCGGU----------UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 44218 0.66 0.817818
Target:  5'- -cCGCCgcggAGCGGGcgaGCGCCGAggccguCGCGGa -3'
miRNA:   3'- gaGCGG----UCGCUCa--UGCGGUU------GCGCCa -5'
25954 5' -58.1 NC_005337.1 + 128376 0.66 0.817818
Target:  5'- uUCGCCuGCGAc-GCGCuCcGCGUGGUc -3'
miRNA:   3'- gAGCGGuCGCUcaUGCG-GuUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 37099 0.66 0.817818
Target:  5'- gCUCGCCggAGCGcAGcaGCGCCGAgGCGc- -3'
miRNA:   3'- -GAGCGG--UCGC-UCa-UGCGGUUgCGCca -5'
25954 5' -58.1 NC_005337.1 + 118235 0.66 0.817818
Target:  5'- -cCGCgCGGCGGcagGCGCCGcaGCGCGuGUa -3'
miRNA:   3'- gaGCG-GUCGCUca-UGCGGU--UGCGC-CA- -5'
25954 5' -58.1 NC_005337.1 + 2367 0.66 0.809161
Target:  5'- -gCGCCAGgugcucuauCGGGUGCGUCGACgacacgcgcagGCGGa -3'
miRNA:   3'- gaGCGGUC---------GCUCAUGCGGUUG-----------CGCCa -5'
25954 5' -58.1 NC_005337.1 + 24281 0.66 0.809161
Target:  5'- gCUgGCCGGCGcucACGCagGGCGUGGUg -3'
miRNA:   3'- -GAgCGGUCGCucaUGCGg-UUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 62809 0.66 0.809161
Target:  5'- -gCGuCCAGCGAGaccUGCGgC-ACGUGGUa -3'
miRNA:   3'- gaGC-GGUCGCUC---AUGCgGuUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 62956 0.66 0.809161
Target:  5'- -cCGCCGcGCGGGUcgcCGCCGACgagaagugcguGCGGa -3'
miRNA:   3'- gaGCGGU-CGCUCAu--GCGGUUG-----------CGCCa -5'
25954 5' -58.1 NC_005337.1 + 100743 0.66 0.809161
Target:  5'- -aCGUCGGCGAcgacgcGUGCaGCCGGCGCa-- -3'
miRNA:   3'- gaGCGGUCGCU------CAUG-CGGUUGCGcca -5'
25954 5' -58.1 NC_005337.1 + 99415 0.66 0.809161
Target:  5'- -cCGCgggCGGCGGGUGCGUgcugagccgCGGCGUGGg -3'
miRNA:   3'- gaGCG---GUCGCUCAUGCG---------GUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 76065 0.66 0.809161
Target:  5'- -cCGCgCGGCG-GUACGCC---GCGGUc -3'
miRNA:   3'- gaGCG-GUCGCuCAUGCGGuugCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 110355 0.66 0.809161
Target:  5'- -gCGCCugccGCGGGcGCGCgGGCGCGcGg -3'
miRNA:   3'- gaGCGGu---CGCUCaUGCGgUUGCGC-Ca -5'
25954 5' -58.1 NC_005337.1 + 24684 0.66 0.809161
Target:  5'- -cCGCC-GCGAGUACGagAACguGCGGa -3'
miRNA:   3'- gaGCGGuCGCUCAUGCggUUG--CGCCa -5'
25954 5' -58.1 NC_005337.1 + 78618 0.66 0.808287
Target:  5'- cCUUGCC-GCGGGagACGUUcgaggugAGCGCGGUg -3'
miRNA:   3'- -GAGCGGuCGCUCa-UGCGG-------UUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 37049 0.66 0.80389
Target:  5'- gUCGUUGGCGaAGUGCcggcugaccacgaugGCCAccaugGCGCGGUc -3'
miRNA:   3'- gAGCGGUCGC-UCAUG---------------CGGU-----UGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.