miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25954 5' -58.1 NC_005337.1 + 48635 0.66 0.791379
Target:  5'- -gUGCuCGGCGG--ACGCCAGCGCGc- -3'
miRNA:   3'- gaGCG-GUCGCUcaUGCGGUUGCGCca -5'
25954 5' -58.1 NC_005337.1 + 78618 0.66 0.808287
Target:  5'- cCUUGCC-GCGGGagACGUUcgaggugAGCGCGGUg -3'
miRNA:   3'- -GAGCGGuCGCUCa-UGCGG-------UUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 99415 0.66 0.809161
Target:  5'- -cCGCgggCGGCGGGUGCGUgcugagccgCGGCGUGGg -3'
miRNA:   3'- gaGCG---GUCGCUCAUGCG---------GUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 75796 0.66 0.799455
Target:  5'- gCUCGCggagcuccgucagCAGCGAG-ACGUCGGCGgaGGUc -3'
miRNA:   3'- -GAGCG-------------GUCGCUCaUGCGGUUGCg-CCA- -5'
25954 5' -58.1 NC_005337.1 + 39940 0.66 0.800345
Target:  5'- -gUGCgCGGCGG--GCGCCucGCGCGGg -3'
miRNA:   3'- gaGCG-GUCGCUcaUGCGGu-UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 13084 0.66 0.800345
Target:  5'- -gCGCggaAGCGGcgACGCCAaucGCGCGGg -3'
miRNA:   3'- gaGCGg--UCGCUcaUGCGGU---UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 845 0.66 0.791379
Target:  5'- gCUCGacgaaggCGGCGGGcaGCGCgGGCGCGGc -3'
miRNA:   3'- -GAGCg------GUCGCUCa-UGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 81807 0.66 0.782272
Target:  5'- uCUCGCgGGCGcc-GCgGCuCAGCGCGGa -3'
miRNA:   3'- -GAGCGgUCGCucaUG-CG-GUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 110355 0.66 0.809161
Target:  5'- -gCGCCugccGCGGGcGCGCgGGCGCGcGg -3'
miRNA:   3'- gaGCGGu---CGCUCaUGCGgUUGCGC-Ca -5'
25954 5' -58.1 NC_005337.1 + 109528 0.66 0.773031
Target:  5'- -cCGCCcGCGcg-GCGCgAugGCGGUg -3'
miRNA:   3'- gaGCGGuCGCucaUGCGgUugCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 737 0.66 0.791379
Target:  5'- -aCGCgGGCGAGagcgcgGCGCC--CGCGGc -3'
miRNA:   3'- gaGCGgUCGCUCa-----UGCGGuuGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 104012 0.66 0.799455
Target:  5'- -aCGCCuuccuggAGCaGGGcgACGCCAucGCGCGGa -3'
miRNA:   3'- gaGCGG-------UCG-CUCa-UGCGGU--UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 6393 0.66 0.800345
Target:  5'- gCUCGCCGGCGccgcGCGCCAccagacugugcACGCa-- -3'
miRNA:   3'- -GAGCGGUCGCuca-UGCGGU-----------UGCGcca -5'
25954 5' -58.1 NC_005337.1 + 10423 0.66 0.782272
Target:  5'- -gCGcCCAG-GAGgACGCCuGCGCGGc -3'
miRNA:   3'- gaGC-GGUCgCUCaUGCGGuUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 74932 0.66 0.773031
Target:  5'- uUCGCgCGcGCGGccGCGCgGAUGCGGUg -3'
miRNA:   3'- gAGCG-GU-CGCUcaUGCGgUUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 100743 0.66 0.809161
Target:  5'- -aCGUCGGCGAcgacgcGUGCaGCCGGCGCa-- -3'
miRNA:   3'- gaGCGGUCGCU------CAUG-CGGUUGCGcca -5'
25954 5' -58.1 NC_005337.1 + 128376 0.66 0.817818
Target:  5'- uUCGCCuGCGAc-GCGCuCcGCGUGGUc -3'
miRNA:   3'- gAGCGGuCGCUcaUGCG-GuUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 71316 0.66 0.791379
Target:  5'- uCUCGUCGGCG---GCGaCCcGCGCGGc -3'
miRNA:   3'- -GAGCGGUCGCucaUGC-GGuUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 76065 0.66 0.809161
Target:  5'- -cCGCgCGGCG-GUACGCC---GCGGUc -3'
miRNA:   3'- gaGCG-GUCGCuCAUGCGGuugCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 45312 0.66 0.800345
Target:  5'- uUCGCCAGCGucggGGUGC-CCAccaagaccAgGCGGa -3'
miRNA:   3'- gAGCGGUCGC----UCAUGcGGU--------UgCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.