miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25954 5' -58.1 NC_005337.1 + 557 0.71 0.524315
Target:  5'- -cCGCCAccggccGCGcGUACGCCGcggccGCGCGGa -3'
miRNA:   3'- gaGCGGU------CGCuCAUGCGGU-----UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 557 0.71 0.524315
Target:  5'- -cCGCCAccggccGCGcGUACGCCGcggccGCGCGGa -3'
miRNA:   3'- gaGCGGU------CGCuCAUGCGGU-----UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 595 0.68 0.685356
Target:  5'- -cCGCCGGCGA--ACGCC-ACGCaGGc -3'
miRNA:   3'- gaGCGGUCGCUcaUGCGGuUGCG-CCa -5'
25954 5' -58.1 NC_005337.1 + 595 0.68 0.685356
Target:  5'- -cCGCCGGCGA--ACGCC-ACGCaGGc -3'
miRNA:   3'- gaGCGGUCGCUcaUGCGGuUGCG-CCa -5'
25954 5' -58.1 NC_005337.1 + 737 0.66 0.791379
Target:  5'- -aCGCgGGCGAGagcgcgGCGCC--CGCGGc -3'
miRNA:   3'- gaGCGgUCGCUCa-----UGCGGuuGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 737 0.66 0.791379
Target:  5'- -aCGCgGGCGAGagcgcgGCGCC--CGCGGc -3'
miRNA:   3'- gaGCGgUCGCUCa-----UGCGGuuGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 845 0.66 0.791379
Target:  5'- gCUCGacgaaggCGGCGGGcaGCGCgGGCGCGGc -3'
miRNA:   3'- -GAGCg------GUCGCUCa-UGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 845 0.66 0.791379
Target:  5'- gCUCGacgaaggCGGCGGGcaGCGCgGGCGCGGc -3'
miRNA:   3'- -GAGCg------GUCGCUCa-UGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 1179 0.72 0.47643
Target:  5'- -cCGCUAgGCG-GUGCGCgAGCGCGGc -3'
miRNA:   3'- gaGCGGU-CGCuCAUGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 1406 0.69 0.613355
Target:  5'- gCUCGUCGGCGAucaccacGU-UGCUGACGUGGUg -3'
miRNA:   3'- -GAGCGGUCGCU-------CAuGCGGUUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 1518 0.67 0.754186
Target:  5'- -gCGCCAGCGcGUcCGCCAcuucgugUGCGGg -3'
miRNA:   3'- gaGCGGUCGCuCAuGCGGUu------GCGCCa -5'
25954 5' -58.1 NC_005337.1 + 2187 0.66 0.817818
Target:  5'- -gCGCaCGGCGcAGgcggcggACGCgGGCGCGGc -3'
miRNA:   3'- gaGCG-GUCGC-UCa------UGCGgUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 2367 0.66 0.809161
Target:  5'- -gCGCCAGgugcucuauCGGGUGCGUCGACgacacgcgcagGCGGa -3'
miRNA:   3'- gaGCGGUC---------GCUCAUGCGGUUG-----------CGCCa -5'
25954 5' -58.1 NC_005337.1 + 2565 0.67 0.763666
Target:  5'- gUCGUaCAGCGcGgacuccaugGCgGCCAGCGCGGUu -3'
miRNA:   3'- gAGCG-GUCGCuCa--------UG-CGGUUGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 2874 0.66 0.800345
Target:  5'- -gCGCCAGCGGGaACacgaucacgGCCc-CGCGGUc -3'
miRNA:   3'- gaGCGGUCGCUCaUG---------CGGuuGCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 3032 0.67 0.741704
Target:  5'- -gCGCCGaugugcGCGAccacGUACGCCAcacaccggcggcuaGCGCGGa -3'
miRNA:   3'- gaGCGGU------CGCU----CAUGCGGU--------------UGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 3141 0.68 0.685356
Target:  5'- -gCGCCgguacAGCGAGUGCaggaacCCGAgGCGGUa -3'
miRNA:   3'- gaGCGG-----UCGCUCAUGc-----GGUUgCGCCA- -5'
25954 5' -58.1 NC_005337.1 + 3561 0.68 0.685356
Target:  5'- gUCGCCgAGCGAcacggaguccgGgccCGUCAGCGCGGa -3'
miRNA:   3'- gAGCGG-UCGCU-----------Cau-GCGGUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 4234 0.66 0.800345
Target:  5'- gUCGCCgGGUGAGUGuu-CAGCGCGGc -3'
miRNA:   3'- gAGCGG-UCGCUCAUgcgGUUGCGCCa -5'
25954 5' -58.1 NC_005337.1 + 5587 0.73 0.404707
Target:  5'- gUCGCCAGCGcgcGUGC-CCGGCGgGGg -3'
miRNA:   3'- gAGCGGUCGCu--CAUGcGGUUGCgCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.