miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25955 3' -59.9 NC_005337.1 + 38455 0.65 0.741112
Target:  5'- cCGAGGCguacgccuucauGCGguGCgCGCCGGGCGcGCGc -3'
miRNA:   3'- -GCUCCGau----------CGC--UG-GCGGUUCGC-CGCu -5'
25955 3' -59.9 NC_005337.1 + 133157 0.66 0.735362
Target:  5'- gCGcGuGCU-GCGGCUGCUcccGGCGGCGGc -3'
miRNA:   3'- -GCuC-CGAuCGCUGGCGGu--UCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 108840 0.66 0.735362
Target:  5'- cCGAaGCgcgcgGGCGACaCGCCGucguGCGaGCGGa -3'
miRNA:   3'- -GCUcCGa----UCGCUG-GCGGUu---CGC-CGCU- -5'
25955 3' -59.9 NC_005337.1 + 10507 0.66 0.735362
Target:  5'- cCGAGGgaAacGCGGCCacguuGCCG-GUGGCGGa -3'
miRNA:   3'- -GCUCCgaU--CGCUGG-----CGGUuCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 98480 0.66 0.735362
Target:  5'- -aAGGC-AGgGGCgCGCCG-GCGGCGu -3'
miRNA:   3'- gcUCCGaUCgCUG-GCGGUuCGCCGCu -5'
25955 3' -59.9 NC_005337.1 + 77665 0.66 0.735362
Target:  5'- aCGcGGCcGGCGAagGCCAggaAGCGGuCGAc -3'
miRNA:   3'- -GCuCCGaUCGCUggCGGU---UCGCC-GCU- -5'
25955 3' -59.9 NC_005337.1 + 2845 0.66 0.735362
Target:  5'- uGAGGaucuugAGCGACUugGCCGAuCGGCGc -3'
miRNA:   3'- gCUCCga----UCGCUGG--CGGUUcGCCGCu -5'
25955 3' -59.9 NC_005337.1 + 51903 0.66 0.735362
Target:  5'- aCGAGGCccucGGCG-CCGUgcAGuCGGCGGc -3'
miRNA:   3'- -GCUCCGa---UCGCuGGCGguUC-GCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 95601 0.66 0.735362
Target:  5'- cCGGGuGC-AGCaGCgCGCCAuGGCGGCGu -3'
miRNA:   3'- -GCUC-CGaUCGcUG-GCGGU-UCGCCGCu -5'
25955 3' -59.9 NC_005337.1 + 133157 0.66 0.735362
Target:  5'- gCGcGuGCU-GCGGCUGCUcccGGCGGCGGc -3'
miRNA:   3'- -GCuC-CGAuCGCUGGCGGu--UCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 66330 0.66 0.7344
Target:  5'- -cGGGCUGGCGACacgugcuCGUgGAGC-GCGAc -3'
miRNA:   3'- gcUCCGAUCGCUG-------GCGgUUCGcCGCU- -5'
25955 3' -59.9 NC_005337.1 + 64901 0.66 0.725709
Target:  5'- aGAGGCggaccuggcgcUAGCGGCCGgCCcgcgcgggaAAGCGcGCGc -3'
miRNA:   3'- gCUCCG-----------AUCGCUGGC-GG---------UUCGC-CGCu -5'
25955 3' -59.9 NC_005337.1 + 61833 0.66 0.725709
Target:  5'- gCGAGcuugaGCUGGUGcUCGCacGGCGGCGAc -3'
miRNA:   3'- -GCUC-----CGAUCGCuGGCGguUCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 123823 0.66 0.725709
Target:  5'- gGAGGUccUGGCGcacgacgcgcgcACCGCCGcGCaGGCGu -3'
miRNA:   3'- gCUCCG--AUCGC------------UGGCGGUuCG-CCGCu -5'
25955 3' -59.9 NC_005337.1 + 120643 0.66 0.725709
Target:  5'- uCGAGGa-GGUGGCCcugucCCucGGCGGCGAc -3'
miRNA:   3'- -GCUCCgaUCGCUGGc----GGu-UCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 109703 0.66 0.725709
Target:  5'- uCGAGGauccguUGGCGAUggcgccggaaCGCCGAGCagucGGCGGu -3'
miRNA:   3'- -GCUCCg-----AUCGCUG----------GCGGUUCG----CCGCU- -5'
25955 3' -59.9 NC_005337.1 + 105261 0.66 0.725709
Target:  5'- --cGGCUuGgGGCCGCCGuggcugacccugGGCGGCc- -3'
miRNA:   3'- gcuCCGAuCgCUGGCGGU------------UCGCCGcu -5'
25955 3' -59.9 NC_005337.1 + 54262 0.66 0.725709
Target:  5'- cCGGGuGC-GGCGcuuAgCGCCGcGCGGCGAc -3'
miRNA:   3'- -GCUC-CGaUCGC---UgGCGGUuCGCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 3064 0.66 0.715978
Target:  5'- cCGGcGGCUAGCGcggacuCCGCgCAccuCGGCGAc -3'
miRNA:   3'- -GCU-CCGAUCGCu-----GGCG-GUuc-GCCGCU- -5'
25955 3' -59.9 NC_005337.1 + 11523 0.66 0.715978
Target:  5'- cCGGGcaGCgcagGGUGGCCGCCAGGuCGuccGCGGg -3'
miRNA:   3'- -GCUC--CGa---UCGCUGGCGGUUC-GC---CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.