miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25955 5' -58.7 NC_005337.1 + 85389 0.66 0.762475
Target:  5'- -uCCaGGUGCgUGGucuGGCCGCCGgGCGGg -3'
miRNA:   3'- auGG-CCAUGgACCu--CUGGCGGC-UGUU- -5'
25955 5' -58.7 NC_005337.1 + 68403 0.66 0.7529
Target:  5'- cUGCgCGcGUGCgUGGuAGcgcgcGCCGCCGACGAc -3'
miRNA:   3'- -AUG-GC-CAUGgACC-UC-----UGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 97715 0.66 0.7529
Target:  5'- cGCCGGUGg--GGuGGCuCGCCGGCGc -3'
miRNA:   3'- aUGGCCAUggaCCuCUG-GCGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 15447 0.66 0.743218
Target:  5'- aUACCGGU-CCaGGAGACacugGCUGGCc- -3'
miRNA:   3'- -AUGGCCAuGGaCCUCUGg---CGGCUGuu -5'
25955 5' -58.7 NC_005337.1 + 42723 0.66 0.733439
Target:  5'- gUACCGGUACgUGGccacGGCCgcGCCGAg-- -3'
miRNA:   3'- -AUGGCCAUGgACCu---CUGG--CGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 95557 0.66 0.724562
Target:  5'- cGCCGGUGuCCcccgucaggacgacgGGccGCCGCCGACAc -3'
miRNA:   3'- aUGGCCAU-GGa--------------CCucUGGCGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 124513 0.66 0.723571
Target:  5'- gGCCGGUGCCaacccGGc-GCCGgCCGACGc -3'
miRNA:   3'- aUGGCCAUGGa----CCucUGGC-GGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 63752 0.66 0.723571
Target:  5'- aACCGGUACC-GGAcGAcaaccCCGCCuACGAg -3'
miRNA:   3'- aUGGCCAUGGaCCU-CU-----GGCGGcUGUU- -5'
25955 5' -58.7 NC_005337.1 + 115482 0.67 0.693532
Target:  5'- cACCGGUGCaCgcacGGGGCCGUgGACGu -3'
miRNA:   3'- aUGGCCAUG-Gac--CUCUGGCGgCUGUu -5'
25955 5' -58.7 NC_005337.1 + 115145 0.67 0.693532
Target:  5'- -cCCGGgcuucgaccACCUGGAGAU-GCCGGCGc -3'
miRNA:   3'- auGGCCa--------UGGACCUCUGgCGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 44027 0.67 0.684419
Target:  5'- cUACCGGUACCUGcccacggacGAGACagaguaccucugcaaGCUGGCGg -3'
miRNA:   3'- -AUGGCCAUGGAC---------CUCUGg--------------CGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 27972 0.67 0.663029
Target:  5'- cACCGGaACCUGGAG-CUGUgcaagCGGCAGc -3'
miRNA:   3'- aUGGCCaUGGACCUCuGGCG-----GCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 69467 0.67 0.663029
Target:  5'- gGCaGGUACCgGGAGGcgacguccCCGUCGGCGAa -3'
miRNA:   3'- aUGgCCAUGGaCCUCU--------GGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 75095 0.67 0.662007
Target:  5'- cGCCGGUgccccgacgcacgGCCUGGGGGaggaaCGUCGugGGg -3'
miRNA:   3'- aUGGCCA-------------UGGACCUCUg----GCGGCugUU- -5'
25955 5' -58.7 NC_005337.1 + 101525 0.67 0.6528
Target:  5'- gGCUGGagGCCgUGGAcguGACCGCCGcCAGc -3'
miRNA:   3'- aUGGCCa-UGG-ACCU---CUGGCGGCuGUU- -5'
25955 5' -58.7 NC_005337.1 + 23730 0.68 0.642554
Target:  5'- gACCGccGCCgcGGAGcggcagcagaagGCCGCCGACAAg -3'
miRNA:   3'- aUGGCcaUGGa-CCUC------------UGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 132849 0.68 0.642554
Target:  5'- cGCCGGcauacACCacgucagcaacgUGGuGAUCGCCGACGAg -3'
miRNA:   3'- aUGGCCa----UGG------------ACCuCUGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 64744 0.68 0.642554
Target:  5'- cGCCGGUucCCUGcgaucgacGAGGCCuCCGGCGAg -3'
miRNA:   3'- aUGGCCAu-GGAC--------CUCUGGcGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 576 0.68 0.622046
Target:  5'- cGCCGcgGCCgcgcGGAaGCCGCCGGCGAa -3'
miRNA:   3'- aUGGCcaUGGa---CCUcUGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 62951 0.68 0.622046
Target:  5'- cACCGccGCCgcgcgGGucGCCGCCGACGAg -3'
miRNA:   3'- aUGGCcaUGGa----CCucUGGCGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.