miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25955 5' -58.7 NC_005337.1 + 125158 1.04 0.002563
Target:  5'- gUACCGGUACCUGGAGACCGCCGACAAg -3'
miRNA:   3'- -AUGGCCAUGGACCUCUGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 121343 0.82 0.099319
Target:  5'- cGCCGGUACCUGGAGuuCGgCGGCGAc -3'
miRNA:   3'- aUGGCCAUGGACCUCugGCgGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 51545 0.78 0.180133
Target:  5'- cUGCCGG-GCCUGGAGGCCGCguucgUGACGGg -3'
miRNA:   3'- -AUGGCCaUGGACCUCUGGCG-----GCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 101921 0.77 0.189417
Target:  5'- gGCUGGU-CCUGGAGACCGUCcugGACGAg -3'
miRNA:   3'- aUGGCCAuGGACCUCUGGCGG---CUGUU- -5'
25955 5' -58.7 NC_005337.1 + 92201 0.77 0.20413
Target:  5'- gUACCGGUGaccgauauuCCUGGAGACUacggGCCGACGu -3'
miRNA:   3'- -AUGGCCAU---------GGACCUCUGG----CGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 75598 0.74 0.285648
Target:  5'- gACCGaguacguGUACCUGGGGAgCGCCGAgGAc -3'
miRNA:   3'- aUGGC-------CAUGGACCUCUgGCGGCUgUU- -5'
25955 5' -58.7 NC_005337.1 + 45541 0.74 0.286318
Target:  5'- aGCCGGUG-CUGGAGucggcGCCGCCGugGu -3'
miRNA:   3'- aUGGCCAUgGACCUC-----UGGCGGCugUu -5'
25955 5' -58.7 NC_005337.1 + 98615 0.73 0.336353
Target:  5'- aACCGGgACCUcGGGACCGCCGuCGg -3'
miRNA:   3'- aUGGCCaUGGAcCUCUGGCGGCuGUu -5'
25955 5' -58.7 NC_005337.1 + 126772 0.73 0.351772
Target:  5'- ---aGGUACCUGGAGACCGgcagccCCGugGAc -3'
miRNA:   3'- auggCCAUGGACCUCUGGC------GGCugUU- -5'
25955 5' -58.7 NC_005337.1 + 105196 0.72 0.375827
Target:  5'- cGCgGGguccgcgGCCUGGGGGCCGCUGAg-- -3'
miRNA:   3'- aUGgCCa------UGGACCUCUGGCGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 1005 0.72 0.400969
Target:  5'- gGCgGGcgucGCCUGGAGGCCGUCGAa-- -3'
miRNA:   3'- aUGgCCa---UGGACCUCUGGCGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 1005 0.72 0.400969
Target:  5'- gGCgGGcgucGCCUGGAGGCCGUCGAa-- -3'
miRNA:   3'- aUGgCCa---UGGACCUCUGGCGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 52353 0.72 0.409584
Target:  5'- cUACCGG-ACCggGGAcggGGCCGCUGACGg -3'
miRNA:   3'- -AUGGCCaUGGa-CCU---CUGGCGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 44904 0.71 0.427156
Target:  5'- gGCaCGGUGCUgcgGGAGAUCGUgGACAc -3'
miRNA:   3'- aUG-GCCAUGGa--CCUCUGGCGgCUGUu -5'
25955 5' -58.7 NC_005337.1 + 21583 0.71 0.436107
Target:  5'- uUGCCGGUGCCUgugcGGuAGGCCGCCu---- -3'
miRNA:   3'- -AUGGCCAUGGA----CC-UCUGGCGGcuguu -5'
25955 5' -58.7 NC_005337.1 + 50440 0.71 0.436107
Target:  5'- cGCCGGUG-CUGGAGACCcggauccCUGACAAg -3'
miRNA:   3'- aUGGCCAUgGACCUCUGGc------GGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 76016 0.71 0.463594
Target:  5'- cGCCGGUACacgcGGaAGACCGCCG-CGc -3'
miRNA:   3'- aUGGCCAUGga--CC-UCUGGCGGCuGUu -5'
25955 5' -58.7 NC_005337.1 + 54503 0.71 0.463594
Target:  5'- gACCcGcGCCUGGGGGCCuCCGACGGg -3'
miRNA:   3'- aUGGcCaUGGACCUCUGGcGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 49307 0.7 0.49196
Target:  5'- gACCGGcgaUACCUGGAGGCCauccagCGACAc -3'
miRNA:   3'- aUGGCC---AUGGACCUCUGGcg----GCUGUu -5'
25955 5' -58.7 NC_005337.1 + 132375 0.7 0.511309
Target:  5'- cUGCgGGguuCCcGGAGGCCGCCGAg-- -3'
miRNA:   3'- -AUGgCCau-GGaCCUCUGGCGGCUguu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.