miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25955 5' -58.7 NC_005337.1 + 44027 0.67 0.684419
Target:  5'- cUACCGGUACCUGcccacggacGAGACagaguaccucugcaaGCUGGCGg -3'
miRNA:   3'- -AUGGCCAUGGAC---------CUCUGg--------------CGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 45065 0.69 0.56094
Target:  5'- cGCCGGccgGCC-GGAGAUCcguGCCGACGu -3'
miRNA:   3'- aUGGCCa--UGGaCCUCUGG---CGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 42557 0.69 0.581181
Target:  5'- cGCUGGUGCggcugcggCUGGAGGCCGCgGGg-- -3'
miRNA:   3'- aUGGCCAUG--------GACCUCUGGCGgCUguu -5'
25955 5' -58.7 NC_005337.1 + 44424 0.68 0.601568
Target:  5'- cUGCCGGagcGCCgGGAG-CCGCCGcCGGa -3'
miRNA:   3'- -AUGGCCa--UGGaCCUCuGGCGGCuGUU- -5'
25955 5' -58.7 NC_005337.1 + 576 0.68 0.622046
Target:  5'- cGCCGcgGCCgcgcGGAaGCCGCCGGCGAa -3'
miRNA:   3'- aUGGCcaUGGa---CCUcUGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 64744 0.68 0.642554
Target:  5'- cGCCGGUucCCUGcgaucgacGAGGCCuCCGGCGAg -3'
miRNA:   3'- aUGGCCAu-GGAC--------CUCUGGcGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 132849 0.68 0.642554
Target:  5'- cGCCGGcauacACCacgucagcaacgUGGuGAUCGCCGACGAg -3'
miRNA:   3'- aUGGCCa----UGG------------ACCuCUGGCGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 101525 0.67 0.6528
Target:  5'- gGCUGGagGCCgUGGAcguGACCGCCGcCAGc -3'
miRNA:   3'- aUGGCCa-UGG-ACCU---CUGGCGGCuGUU- -5'
25955 5' -58.7 NC_005337.1 + 27972 0.67 0.663029
Target:  5'- cACCGGaACCUGGAG-CUGUgcaagCGGCAGc -3'
miRNA:   3'- aUGGCCaUGGACCUCuGGCG-----GCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 24624 0.69 0.540898
Target:  5'- gUACCGGUACCUGauGAgCGCCaACGAg -3'
miRNA:   3'- -AUGGCCAUGGACcuCUgGCGGcUGUU- -5'
25955 5' -58.7 NC_005337.1 + 15241 0.7 0.521101
Target:  5'- aACCGGU-CCUGGcGG-CGCCGGCGc -3'
miRNA:   3'- aUGGCCAuGGACCuCUgGCGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 132375 0.7 0.511309
Target:  5'- cUGCgGGguuCCcGGAGGCCGCCGAg-- -3'
miRNA:   3'- -AUGgCCau-GGaCCUCUGGCGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 121343 0.82 0.099319
Target:  5'- cGCCGGUACCUGGAGuuCGgCGGCGAc -3'
miRNA:   3'- aUGGCCAUGGACCUCugGCgGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 92201 0.77 0.20413
Target:  5'- gUACCGGUGaccgauauuCCUGGAGACUacggGCCGACGu -3'
miRNA:   3'- -AUGGCCAU---------GGACCUCUGG----CGGCUGUu -5'
25955 5' -58.7 NC_005337.1 + 45541 0.74 0.286318
Target:  5'- aGCCGGUG-CUGGAGucggcGCCGCCGugGu -3'
miRNA:   3'- aUGGCCAUgGACCUC-----UGGCGGCugUu -5'
25955 5' -58.7 NC_005337.1 + 1005 0.72 0.400969
Target:  5'- gGCgGGcgucGCCUGGAGGCCGUCGAa-- -3'
miRNA:   3'- aUGgCCa---UGGACCUCUGGCGGCUguu -5'
25955 5' -58.7 NC_005337.1 + 44904 0.71 0.427156
Target:  5'- gGCaCGGUGCUgcgGGAGAUCGUgGACAc -3'
miRNA:   3'- aUG-GCCAUGGa--CCUCUGGCGgCUGUu -5'
25955 5' -58.7 NC_005337.1 + 54503 0.71 0.463594
Target:  5'- gACCcGcGCCUGGGGGCCuCCGACGGg -3'
miRNA:   3'- aUGGcCaUGGACCUCUGGcGGCUGUU- -5'
25955 5' -58.7 NC_005337.1 + 76016 0.71 0.463594
Target:  5'- cGCCGGUACacgcGGaAGACCGCCG-CGc -3'
miRNA:   3'- aUGGCCAUGga--CC-UCUGGCGGCuGUu -5'
25955 5' -58.7 NC_005337.1 + 49307 0.7 0.49196
Target:  5'- gACCGGcgaUACCUGGAGGCCauccagCGACAc -3'
miRNA:   3'- aUGGCC---AUGGACCUCUGGcg----GCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.