miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25956 3' -61.3 NC_005337.1 + 59986 0.66 0.652282
Target:  5'- aUCAUGUGCccccguggugccauaUGCGGCUauuuuUCGGCgcGCGGAg -3'
miRNA:   3'- gAGUACGCG---------------ACGUCGG-----GGCCG--UGCCU- -5'
25956 3' -61.3 NC_005337.1 + 131336 0.66 0.64827
Target:  5'- gCUCAUGCGCgccgUGC-GCgUCGGCACu-- -3'
miRNA:   3'- -GAGUACGCG----ACGuCGgGGCCGUGccu -5'
25956 3' -61.3 NC_005337.1 + 7865 0.66 0.64827
Target:  5'- gUCGcGCGCcggGCGGCCuuGGC-CGuGAu -3'
miRNA:   3'- gAGUaCGCGa--CGUCGGggCCGuGC-CU- -5'
25956 3' -61.3 NC_005337.1 + 116673 0.66 0.64827
Target:  5'- -aCAUgGUGCUGCAGCCgCC--CGCGGGc -3'
miRNA:   3'- gaGUA-CGCGACGUCGG-GGccGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 29064 0.66 0.64827
Target:  5'- ----aGCGCgcagcucaGCGGCCCCcaGGcCGCGGAc -3'
miRNA:   3'- gaguaCGCGa-------CGUCGGGG--CC-GUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 25668 0.66 0.645259
Target:  5'- cCUCG-GCGCcGCGGCCCUcgaaGGCggcgucgcgcaggaGCGGGu -3'
miRNA:   3'- -GAGUaCGCGaCGUCGGGG----CCG--------------UGCCU- -5'
25956 3' -61.3 NC_005337.1 + 95717 0.66 0.638231
Target:  5'- ----cGCGCaGCAGCgacCCCGG-ACGGAa -3'
miRNA:   3'- gaguaCGCGaCGUCG---GGGCCgUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 18130 0.66 0.638231
Target:  5'- aUgGUGCGCUcguuCGGCCCCcaGGCGCGc- -3'
miRNA:   3'- gAgUACGCGAc---GUCGGGG--CCGUGCcu -5'
25956 3' -61.3 NC_005337.1 + 22630 0.66 0.638231
Target:  5'- -gCcgGCGCggauccGCgaGGCCuUCGGCGCGGAc -3'
miRNA:   3'- gaGuaCGCGa-----CG--UCGG-GGCCGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 87934 0.66 0.637227
Target:  5'- uUCGUGCacgccgGCgGCAGCCCgGaccuccugcgccuGCACGGGg -3'
miRNA:   3'- gAGUACG------CGaCGUCGGGgC-------------CGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 132104 0.66 0.628188
Target:  5'- -cCGUGCGC-GuCGGCgCCGuGCGCGGc -3'
miRNA:   3'- gaGUACGCGaC-GUCGgGGC-CGUGCCu -5'
25956 3' -61.3 NC_005337.1 + 60955 0.66 0.628188
Target:  5'- -gCAUGCGCaugggGCGcgcGCCCaCGcGCugGGAc -3'
miRNA:   3'- gaGUACGCGa----CGU---CGGG-GC-CGugCCU- -5'
25956 3' -61.3 NC_005337.1 + 24747 0.66 0.627184
Target:  5'- cCUC--GCGCUGCAGCacgaggaCCUGGCACc-- -3'
miRNA:   3'- -GAGuaCGCGACGUCG-------GGGCCGUGccu -5'
25956 3' -61.3 NC_005337.1 + 53772 0.66 0.62618
Target:  5'- gUCGUGCGguucCUGCGGCgcaacauguucaCCGGCGUGGAg -3'
miRNA:   3'- gAGUACGC----GACGUCGg-----------GGCCGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 33666 0.66 0.625176
Target:  5'- gUCAUgGCGCgcaugagguagucgUGCAGCCgCGaGCGCGaGAu -3'
miRNA:   3'- gAGUA-CGCG--------------ACGUCGGgGC-CGUGC-CU- -5'
25956 3' -61.3 NC_005337.1 + 125357 0.66 0.618148
Target:  5'- uUCAcgGCGCUGCAcacguacauguGCUUCGGgACGGu -3'
miRNA:   3'- gAGUa-CGCGACGU-----------CGGGGCCgUGCCu -5'
25956 3' -61.3 NC_005337.1 + 95925 0.66 0.618148
Target:  5'- gUCGUGUGCgugaugcGCAGCgcguacucgCCCGGCGcCGGc -3'
miRNA:   3'- gAGUACGCGa------CGUCG---------GGGCCGU-GCCu -5'
25956 3' -61.3 NC_005337.1 + 83965 0.66 0.608119
Target:  5'- ----cGCGCaggGCAGCggCGGCGCGGGc -3'
miRNA:   3'- gaguaCGCGa--CGUCGggGCCGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 35073 0.66 0.608119
Target:  5'- ----cGCGCgagaacGCGuCUCCGGCGCGGAu -3'
miRNA:   3'- gaguaCGCGa-----CGUcGGGGCCGUGCCU- -5'
25956 3' -61.3 NC_005337.1 + 57150 0.66 0.608119
Target:  5'- -cCGUGgaGC-GCAGCaCCCGGCGCGu- -3'
miRNA:   3'- gaGUACg-CGaCGUCG-GGGCCGUGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.