miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25956 5' -52.4 NC_005337.1 + 85991 0.66 0.977143
Target:  5'- aGGcgCGaccgcgGGUCcaGCCGCAGGUGCGucACg -3'
miRNA:   3'- -CCaaGUa-----CUAG--CGGCGUCCGCGUu-UG- -5'
25956 5' -52.4 NC_005337.1 + 127247 0.66 0.977143
Target:  5'- ---aCGUGcUCgGCCugaugcuggagGCGGGCGCGGACg -3'
miRNA:   3'- ccaaGUACuAG-CGG-----------CGUCCGCGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 39269 0.66 0.977143
Target:  5'- cGUUCGcGGUgGCCGCGcuggcggcGGCGguGAUa -3'
miRNA:   3'- cCAAGUaCUAgCGGCGU--------CCGCguUUG- -5'
25956 5' -52.4 NC_005337.1 + 110344 0.66 0.97455
Target:  5'- cGGcgUCGcGcgCgccuGCCGCGGGCGCGcgGGCg -3'
miRNA:   3'- -CCa-AGUaCuaG----CGGCGUCCGCGU--UUG- -5'
25956 5' -52.4 NC_005337.1 + 122090 0.66 0.97455
Target:  5'- cGGUgcucGAccagcUCGUCGCGcacGGCGCGGACa -3'
miRNA:   3'- -CCAaguaCU-----AGCGGCGU---CCGCGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 88507 0.66 0.97455
Target:  5'- --gUCAUGGacagCGCCGCGcGGUaCGAACg -3'
miRNA:   3'- ccaAGUACUa---GCGGCGU-CCGcGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 74999 0.66 0.97455
Target:  5'- aGGUg-AUGAcguuguUCGcCCGguGGCGCAGc- -3'
miRNA:   3'- -CCAagUACU------AGC-GGCguCCGCGUUug -5'
25956 5' -52.4 NC_005337.1 + 98618 0.66 0.97455
Target:  5'- cGGgaccUCggGAcCGCCGUcGGCGCGAc- -3'
miRNA:   3'- -CCa---AGuaCUaGCGGCGuCCGCGUUug -5'
25956 5' -52.4 NC_005337.1 + 106051 0.66 0.973732
Target:  5'- cGUUUcgGUGAUCGUguacucggacaacuCGCGGGCGUAcgagGGCa -3'
miRNA:   3'- cCAAG--UACUAGCG--------------GCGUCCGCGU----UUG- -5'
25956 5' -52.4 NC_005337.1 + 42376 0.66 0.972039
Target:  5'- --gUCGUGAccggcgacccggaggCGCCGCGGcGCGCGGc- -3'
miRNA:   3'- ccaAGUACUa--------------GCGGCGUC-CGCGUUug -5'
25956 5' -52.4 NC_005337.1 + 131242 0.66 0.971749
Target:  5'- cGUaCGUGGUCG-CGCAcaucGGCGCGcACg -3'
miRNA:   3'- cCAaGUACUAGCgGCGU----CCGCGUuUG- -5'
25956 5' -52.4 NC_005337.1 + 102886 0.66 0.971749
Target:  5'- ---aCAUGAUgCGCCGCgaGGGCgGCAu-- -3'
miRNA:   3'- ccaaGUACUA-GCGGCG--UCCG-CGUuug -5'
25956 5' -52.4 NC_005337.1 + 94028 0.66 0.971749
Target:  5'- --cUCGUGGUggCGCgGCGcGGCGCGgccGACg -3'
miRNA:   3'- ccaAGUACUA--GCGgCGU-CCGCGU---UUG- -5'
25956 5' -52.4 NC_005337.1 + 69915 0.66 0.971749
Target:  5'- aGUUCA----CGCCGUAGGUGCGc-- -3'
miRNA:   3'- cCAAGUacuaGCGGCGUCCGCGUuug -5'
25956 5' -52.4 NC_005337.1 + 127355 0.66 0.971749
Target:  5'- uGGUggCgAUGAUgcUGCgCGCcGGCGCGGACc -3'
miRNA:   3'- -CCAa-G-UACUA--GCG-GCGuCCGCGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 128313 0.66 0.971749
Target:  5'- --gUC-UGcUCGCgCGC-GGCGCGAGCg -3'
miRNA:   3'- ccaAGuACuAGCG-GCGuCCGCGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 123610 0.66 0.971749
Target:  5'- ---aCGUGccgCGCuCGCGGGUGCuGACg -3'
miRNA:   3'- ccaaGUACua-GCG-GCGUCCGCGuUUG- -5'
25956 5' -52.4 NC_005337.1 + 68022 0.66 0.971749
Target:  5'- aGGUUC-UGuaaAUCGCCGCcgaugGGGaCGCGGGa -3'
miRNA:   3'- -CCAAGuAC---UAGCGGCG-----UCC-GCGUUUg -5'
25956 5' -52.4 NC_005337.1 + 129515 0.66 0.971749
Target:  5'- --gUCAUcGAcgCGCUGCucgcgcgcGGCGCGAGCg -3'
miRNA:   3'- ccaAGUA-CUa-GCGGCGu-------CCGCGUUUG- -5'
25956 5' -52.4 NC_005337.1 + 93564 0.66 0.968733
Target:  5'- cGGUcUCGg---CGUCGCAGGCGU--GCa -3'
miRNA:   3'- -CCA-AGUacuaGCGGCGUCCGCGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.