miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25957 3' -55.5 NC_005337.1 + 132590 0.65 0.927553
Target:  5'- uGcGACGCGCGCUGCggcugcgguucagGUUCGCgacgcgCCu -3'
miRNA:   3'- gC-CUGCGUGCGGCGa------------UAAGCGgaa---GG- -5'
25957 3' -55.5 NC_005337.1 + 49037 0.66 0.924329
Target:  5'- gCGGugGucgucgccaucCugGCCGCcgucUUCGCCUgguacgCCa -3'
miRNA:   3'- -GCCugC-----------GugCGGCGau--AAGCGGAa-----GG- -5'
25957 3' -55.5 NC_005337.1 + 122543 0.66 0.924329
Target:  5'- gGcGACGCGCGCUGCagccggUGCUgcUCCa -3'
miRNA:   3'- gC-CUGCGUGCGGCGauaa--GCGGa-AGG- -5'
25957 3' -55.5 NC_005337.1 + 24535 0.66 0.924329
Target:  5'- gCGGACGUGCugcgcaccGCCGaCUGcUCGgCgUUCCg -3'
miRNA:   3'- -GCCUGCGUG--------CGGC-GAUaAGC-GgAAGG- -5'
25957 3' -55.5 NC_005337.1 + 95320 0.66 0.924329
Target:  5'- uCGGGCGCcgaucggugcGCGUCGCaGUagCGCCggagcgCCg -3'
miRNA:   3'- -GCCUGCG----------UGCGGCGaUAa-GCGGaa----GG- -5'
25957 3' -55.5 NC_005337.1 + 71620 0.66 0.924329
Target:  5'- aCGGACGaCGacaucCGCCuGCUcUUCGCCa-CCa -3'
miRNA:   3'- -GCCUGC-GU-----GCGG-CGAuAAGCGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 100404 0.66 0.924329
Target:  5'- gCGGGCGCGCGCuacgagaucgaCGCg---CGCCa--- -3'
miRNA:   3'- -GCCUGCGUGCG-----------GCGauaaGCGGaagg -5'
25957 3' -55.5 NC_005337.1 + 16546 0.66 0.924329
Target:  5'- uGGAUGCACGCguccCGCagcacCGUCUUCa -3'
miRNA:   3'- gCCUGCGUGCG----GCGauaa-GCGGAAGg -5'
25957 3' -55.5 NC_005337.1 + 117311 0.66 0.924329
Target:  5'- uGGACGCcuccGCGCaCGCguucggGUUCuccagggccgugGUCUUCCu -3'
miRNA:   3'- gCCUGCG----UGCG-GCGa-----UAAG------------CGGAAGG- -5'
25957 3' -55.5 NC_005337.1 + 11655 0.66 0.923783
Target:  5'- uCGGGCGCguccgagaagaacACGCCGCcgcccgCGUggUCCa -3'
miRNA:   3'- -GCCUGCG-------------UGCGGCGauaa--GCGgaAGG- -5'
25957 3' -55.5 NC_005337.1 + 115233 0.66 0.918764
Target:  5'- uGGGCGCGgaccccuuCGCCuCUGacuaCGUCUUCCg -3'
miRNA:   3'- gCCUGCGU--------GCGGcGAUaa--GCGGAAGG- -5'
25957 3' -55.5 NC_005337.1 + 38666 0.66 0.918764
Target:  5'- aCGGACGCcgccauggcGCGCUGCUGcaC-CCggCCg -3'
miRNA:   3'- -GCCUGCG---------UGCGGCGAUaaGcGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 76002 0.66 0.918764
Target:  5'- aGGugGC-CGCCGUg---CGCCg--- -3'
miRNA:   3'- gCCugCGuGCGGCGauaaGCGGaagg -5'
25957 3' -55.5 NC_005337.1 + 26702 0.66 0.918764
Target:  5'- uGGACaGCACGCgggcgaagacCGCggcgUUGCCgUCCu -3'
miRNA:   3'- gCCUG-CGUGCG----------GCGaua-AGCGGaAGG- -5'
25957 3' -55.5 NC_005337.1 + 121608 0.66 0.918764
Target:  5'- -uGACGgACG-CGCUGUUCGCgUaCCu -3'
miRNA:   3'- gcCUGCgUGCgGCGAUAAGCGgAaGG- -5'
25957 3' -55.5 NC_005337.1 + 132765 0.66 0.918764
Target:  5'- gCGGACGCGCuGgCGCg---CGCCg--- -3'
miRNA:   3'- -GCCUGCGUG-CgGCGauaaGCGGaagg -5'
25957 3' -55.5 NC_005337.1 + 126123 0.66 0.918764
Target:  5'- --cGCGCACGCCGUg---CGCgCggCCa -3'
miRNA:   3'- gccUGCGUGCGGCGauaaGCG-GaaGG- -5'
25957 3' -55.5 NC_005337.1 + 87896 0.66 0.918764
Target:  5'- aGGAC-CugGCugacgCGCUGgcgCGCCUgcgCCg -3'
miRNA:   3'- gCCUGcGugCG-----GCGAUaa-GCGGAa--GG- -5'
25957 3' -55.5 NC_005337.1 + 33349 0.66 0.918764
Target:  5'- uGGGCGCGCGCUaC---UCGUCU-CCg -3'
miRNA:   3'- gCCUGCGUGCGGcGauaAGCGGAaGG- -5'
25957 3' -55.5 NC_005337.1 + 36459 0.66 0.917047
Target:  5'- gCGGACGCACggucuucaccaccuGCCGCacg--GCCUUggCCg -3'
miRNA:   3'- -GCCUGCGUG--------------CGGCGauaagCGGAA--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.