miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25957 3' -55.5 NC_005337.1 + 1511 0.66 0.912959
Target:  5'- uCGG-CGCGCGCCaGCg---CGUCcgCCa -3'
miRNA:   3'- -GCCuGCGUGCGG-CGauaaGCGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 2095 0.68 0.834143
Target:  5'- uCGG-CGCGCGCCGCga---GCCcggUCa -3'
miRNA:   3'- -GCCuGCGUGCGGCGauaagCGGa--AGg -5'
25957 3' -55.5 NC_005337.1 + 2353 0.7 0.743218
Target:  5'- gGGGCcaGCGCGCCGCagcaccggUCGaCCgcgUCCa -3'
miRNA:   3'- gCCUG--CGUGCGGCGaua-----AGC-GGa--AGG- -5'
25957 3' -55.5 NC_005337.1 + 4746 0.68 0.81717
Target:  5'- aCGGACGCucGCGCCGCg---CGCg---- -3'
miRNA:   3'- -GCCUGCG--UGCGGCGauaaGCGgaagg -5'
25957 3' -55.5 NC_005337.1 + 5487 0.67 0.890108
Target:  5'- uCGGuGCGCACGCCcguggacccgaauccGCcug-CGCCUcuuUCCg -3'
miRNA:   3'- -GCC-UGCGUGCGG---------------CGauaaGCGGA---AGG- -5'
25957 3' -55.5 NC_005337.1 + 5565 0.66 0.906916
Target:  5'- gCGGuacACGCGCGCCaGCcgcgUCGCCa--- -3'
miRNA:   3'- -GCC---UGCGUGCGG-CGaua-AGCGGaagg -5'
25957 3' -55.5 NC_005337.1 + 5789 0.68 0.81717
Target:  5'- aCGcGACGCACGcCCGCgagcacgcgGUcucccgCGCCggUCCg -3'
miRNA:   3'- -GC-CUGCGUGC-GGCGa--------UAa-----GCGGa-AGG- -5'
25957 3' -55.5 NC_005337.1 + 7852 0.68 0.850378
Target:  5'- gCGcACGCGCGCCGUcgcgCGCCgggcggCCu -3'
miRNA:   3'- -GCcUGCGUGCGGCGauaaGCGGaa----GG- -5'
25957 3' -55.5 NC_005337.1 + 9134 0.67 0.894126
Target:  5'- cCGGuacagcGCGCuCGCCGCUuggcggUCGCUagCCu -3'
miRNA:   3'- -GCC------UGCGuGCGGCGAua----AGCGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 9364 0.74 0.511309
Target:  5'- uGGACGCGCGCUGCgcGUUCGag--CCa -3'
miRNA:   3'- gCCUGCGUGCGGCGa-UAAGCggaaGG- -5'
25957 3' -55.5 NC_005337.1 + 10338 0.67 0.858201
Target:  5'- uGGAgcUGCACGCgGCcg-UCGCCg-CCg -3'
miRNA:   3'- gCCU--GCGUGCGgCGauaAGCGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 10407 0.69 0.771934
Target:  5'- aGGcCGUacGCGCCGCgcc-CGCCgUCCa -3'
miRNA:   3'- gCCuGCG--UGCGGCGauaaGCGGaAGG- -5'
25957 3' -55.5 NC_005337.1 + 10446 0.68 0.834143
Target:  5'- gCGGuGCGCGCGUCGUg---CGCCaggaccUCCg -3'
miRNA:   3'- -GCC-UGCGUGCGGCGauaaGCGGa-----AGG- -5'
25957 3' -55.5 NC_005337.1 + 11149 0.7 0.733439
Target:  5'- cCGcGACGgGCGCCGCacgacgUGcUCGCCgugCCa -3'
miRNA:   3'- -GC-CUGCgUGCGGCG------AUaAGCGGaa-GG- -5'
25957 3' -55.5 NC_005337.1 + 11462 0.67 0.873226
Target:  5'- gCGGacGCGCACGCUGCgg-UCGauggCCg -3'
miRNA:   3'- -GCC--UGCGUGCGGCGauaAGCggaaGG- -5'
25957 3' -55.5 NC_005337.1 + 11655 0.66 0.923783
Target:  5'- uCGGGCGCguccgagaagaacACGCCGCcgcccgCGUggUCCa -3'
miRNA:   3'- -GCCUGCG-------------UGCGGCGauaa--GCGgaAGG- -5'
25957 3' -55.5 NC_005337.1 + 11736 0.67 0.873226
Target:  5'- cCGGcugcaGCGCGCGUCGCcg--CGCCagggCCa -3'
miRNA:   3'- -GCC-----UGCGUGCGGCGauaaGCGGaa--GG- -5'
25957 3' -55.5 NC_005337.1 + 11867 0.68 0.850378
Target:  5'- gCGGACagGCGCCGCg---CGCCg-CCg -3'
miRNA:   3'- -GCCUGcgUGCGGCGauaaGCGGaaGG- -5'
25957 3' -55.5 NC_005337.1 + 11940 0.68 0.832478
Target:  5'- cCGGGCGCGCGCCGUcgagggacgCGCauaUCg -3'
miRNA:   3'- -GCCUGCGUGCGGCGauaa-----GCGga-AGg -5'
25957 3' -55.5 NC_005337.1 + 12363 0.71 0.693533
Target:  5'- gCGGACGuCGCGgCGCg--UCGCgaUUCCc -3'
miRNA:   3'- -GCCUGC-GUGCgGCGauaAGCGg-AAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.