miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25957 5' -53 NC_005337.1 + 121761 0.66 0.980575
Target:  5'- cAGGAACcUCGAUGaggucaUCGACcaGCUGCu -3'
miRNA:   3'- -UCCUUGcAGCUGC------AGCUGcaUGACGc -5'
25957 5' -53 NC_005337.1 + 38928 0.66 0.980575
Target:  5'- cGGcGAC-UCGGCGcucCGGCGcUACUGCGa -3'
miRNA:   3'- uCC-UUGcAGCUGCa--GCUGC-AUGACGC- -5'
25957 5' -53 NC_005337.1 + 93095 0.66 0.980575
Target:  5'- cGGAGCucaUCGACGUgGAgauCGgggaggACUGCGa -3'
miRNA:   3'- uCCUUGc--AGCUGCAgCU---GCa-----UGACGC- -5'
25957 5' -53 NC_005337.1 + 121907 0.66 0.979251
Target:  5'- aGGGAAuCG-CGACGcgccgCGACGUccgcggacggacggcGCUGCa -3'
miRNA:   3'- -UCCUU-GCaGCUGCa----GCUGCA---------------UGACGc -5'
25957 5' -53 NC_005337.1 + 108883 0.66 0.978332
Target:  5'- cGGu-CGUCGACGgCGGCG-GCaGCGa -3'
miRNA:   3'- uCCuuGCAGCUGCaGCUGCaUGaCGC- -5'
25957 5' -53 NC_005337.1 + 19792 0.66 0.978332
Target:  5'- -uGGAC-UCGGCGUCGuCGUAggGCGg -3'
miRNA:   3'- ucCUUGcAGCUGCAGCuGCAUgaCGC- -5'
25957 5' -53 NC_005337.1 + 33532 0.66 0.975904
Target:  5'- cGGcugcacGCGUCGuCGcCGACGUgcacgucgaagaACUGCGa -3'
miRNA:   3'- uCCu-----UGCAGCuGCaGCUGCA------------UGACGC- -5'
25957 5' -53 NC_005337.1 + 6272 0.66 0.975904
Target:  5'- cGGAgcacguccagcaGCGUCG-UGUCGGCGuUGCaGCGc -3'
miRNA:   3'- uCCU------------UGCAGCuGCAGCUGC-AUGaCGC- -5'
25957 5' -53 NC_005337.1 + 62285 0.66 0.975904
Target:  5'- cGGAuGCgGUCGAUGUUcuuggacACGUACUGCa -3'
miRNA:   3'- uCCU-UG-CAGCUGCAGc------UGCAUGACGc -5'
25957 5' -53 NC_005337.1 + 26572 0.66 0.975904
Target:  5'- aAGGAcaGCGUgaCGACGUCGcCGggGgaGCGa -3'
miRNA:   3'- -UCCU--UGCA--GCUGCAGCuGCa-UgaCGC- -5'
25957 5' -53 NC_005337.1 + 46699 0.66 0.973282
Target:  5'- cGGGAgGUCGGCGacuUCGACaucCUGCu -3'
miRNA:   3'- uCCUUgCAGCUGC---AGCUGcauGACGc -5'
25957 5' -53 NC_005337.1 + 56090 0.66 0.973282
Target:  5'- gAGGAGCG-CGACGUgGAgaagGUGCUcgagGCGc -3'
miRNA:   3'- -UCCUUGCaGCUGCAgCUg---CAUGA----CGC- -5'
25957 5' -53 NC_005337.1 + 84597 0.66 0.973282
Target:  5'- uGGGugaccACGagCGACGcCGugGUGCUGgGc -3'
miRNA:   3'- -UCCu----UGCa-GCUGCaGCugCAUGACgC- -5'
25957 5' -53 NC_005337.1 + 62604 0.66 0.973282
Target:  5'- uGGAgaucagcgucGCGUCGuccGCGUCGGgGUuCUGCu -3'
miRNA:   3'- uCCU----------UGCAGC---UGCAGCUgCAuGACGc -5'
25957 5' -53 NC_005337.1 + 82669 0.66 0.970459
Target:  5'- cAGGGACGcacgCgGugGUUGugGUggaGCUGCu -3'
miRNA:   3'- -UCCUUGCa---G-CugCAGCugCA---UGACGc -5'
25957 5' -53 NC_005337.1 + 31177 0.66 0.970459
Target:  5'- cGGGAgGUCGAUGUCGGCcgACgaGCc -3'
miRNA:   3'- uCCUUgCAGCUGCAGCUGcaUGa-CGc -5'
25957 5' -53 NC_005337.1 + 5870 0.66 0.970459
Target:  5'- gGGGAGCGU-GGCGUUGGgGgACagGCGg -3'
miRNA:   3'- -UCCUUGCAgCUGCAGCUgCaUGa-CGC- -5'
25957 5' -53 NC_005337.1 + 39845 0.67 0.964186
Target:  5'- gAGGAguACGUCGACGgcuUCGgcaucaGCGU-CUGCc -3'
miRNA:   3'- -UCCU--UGCAGCUGC---AGC------UGCAuGACGc -5'
25957 5' -53 NC_005337.1 + 90490 0.67 0.964186
Target:  5'- ---cACGUCGugGUUGGCGaUGCUGa- -3'
miRNA:   3'- uccuUGCAGCugCAGCUGC-AUGACgc -5'
25957 5' -53 NC_005337.1 + 111051 0.67 0.964186
Target:  5'- gAGGAugACG-CGGCG--GAUGUACUGCu -3'
miRNA:   3'- -UCCU--UGCaGCUGCagCUGCAUGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.