miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25957 5' -53 NC_005337.1 + 125707 1.08 0.006644
Target:  5'- cAGGAACGUCGACGUCGACGUACUGCGc -3'
miRNA:   3'- -UCCUUGCAGCUGCAGCUGCAUGACGC- -5'
25957 5' -53 NC_005337.1 + 44114 0.84 0.227229
Target:  5'- aGGGAucaGCGUCGGCGUCGAgucCGUGCgGCGg -3'
miRNA:   3'- -UCCU---UGCAGCUGCAGCU---GCAUGaCGC- -5'
25957 5' -53 NC_005337.1 + 68263 0.77 0.517841
Target:  5'- gGGcGAGCGUCGAgGacuUCGACGU-CUGCGg -3'
miRNA:   3'- -UC-CUUGCAGCUgC---AGCUGCAuGACGC- -5'
25957 5' -53 NC_005337.1 + 22121 0.74 0.650535
Target:  5'- cGGGACGUCGGCGgCGA-GUAC-GCGg -3'
miRNA:   3'- uCCUUGCAGCUGCaGCUgCAUGaCGC- -5'
25957 5' -53 NC_005337.1 + 114456 0.74 0.681418
Target:  5'- gAGGAGCGguuccccgaCGACGUCGACG-ACgUGCu -3'
miRNA:   3'- -UCCUUGCa--------GCUGCAGCUGCaUG-ACGc -5'
25957 5' -53 NC_005337.1 + 16721 0.73 0.705867
Target:  5'- cGGGGAUGUccucgacggcacaccCGACGUCGACGUGCa--- -3'
miRNA:   3'- -UCCUUGCA---------------GCUGCAGCUGCAUGacgc -5'
25957 5' -53 NC_005337.1 + 45159 0.73 0.72197
Target:  5'- cGGAacuGCGUCGugGUCaaGGCGUACcgGCu -3'
miRNA:   3'- uCCU---UGCAGCugCAG--CUGCAUGa-CGc -5'
25957 5' -53 NC_005337.1 + 92394 0.73 0.731935
Target:  5'- -uGGACG-CGACGUCgggGACGUGCUGgGg -3'
miRNA:   3'- ucCUUGCaGCUGCAG---CUGCAUGACgC- -5'
25957 5' -53 NC_005337.1 + 8571 0.73 0.75159
Target:  5'- ---uACGUCGACGUCGACGUucCUGg- -3'
miRNA:   3'- uccuUGCAGCUGCAGCUGCAu-GACgc -5'
25957 5' -53 NC_005337.1 + 120799 0.72 0.780244
Target:  5'- uGGAGCGgcgcgaGACGgucugCGACG-ACUGCGa -3'
miRNA:   3'- uCCUUGCag----CUGCa----GCUGCaUGACGC- -5'
25957 5' -53 NC_005337.1 + 15479 0.71 0.807678
Target:  5'- uGGuuUGUgGuCGUCGGCGcUGCUGCGg -3'
miRNA:   3'- uCCuuGCAgCuGCAGCUGC-AUGACGC- -5'
25957 5' -53 NC_005337.1 + 68376 0.71 0.807678
Target:  5'- uGGAGCGagGGCGgugCGACGUccgccCUGCGc -3'
miRNA:   3'- uCCUUGCagCUGCa--GCUGCAu----GACGC- -5'
25957 5' -53 NC_005337.1 + 17012 0.71 0.833651
Target:  5'- cGGGGCcUCGACGUCcagcGCGcACUGCGu -3'
miRNA:   3'- uCCUUGcAGCUGCAGc---UGCaUGACGC- -5'
25957 5' -53 NC_005337.1 + 96881 0.71 0.841945
Target:  5'- cGGAugcgcgGCGUgGACGUCGGCGagaacacGCUGCc -3'
miRNA:   3'- uCCU------UGCAgCUGCAGCUGCa------UGACGc -5'
25957 5' -53 NC_005337.1 + 14792 0.71 0.841945
Target:  5'- ----uCGUCGAagaUGUCGGCGUugUGCGu -3'
miRNA:   3'- uccuuGCAGCU---GCAGCUGCAugACGC- -5'
25957 5' -53 NC_005337.1 + 25579 0.7 0.850044
Target:  5'- cAGGAACacggaGUCGGUGUCGcCGUagacGCUGCGg -3'
miRNA:   3'- -UCCUUG-----CAGCUGCAGCuGCA----UGACGC- -5'
25957 5' -53 NC_005337.1 + 110970 0.7 0.857942
Target:  5'- cGGccGCGUCGACGUCGuGCGUGUUGaCGu -3'
miRNA:   3'- uCCu-UGCAGCUGCAGC-UGCAUGAC-GC- -5'
25957 5' -53 NC_005337.1 + 131897 0.7 0.857942
Target:  5'- cGGGcgcgcACGUgGACGcggUCGACcgGUGCUGCGg -3'
miRNA:   3'- uCCU-----UGCAgCUGC---AGCUG--CAUGACGC- -5'
25957 5' -53 NC_005337.1 + 133144 0.7 0.857942
Target:  5'- cGGAGCugGUCG-CG-CG-CGUGCUGCGg -3'
miRNA:   3'- uCCUUG--CAGCuGCaGCuGCAUGACGC- -5'
25957 5' -53 NC_005337.1 + 133144 0.7 0.857942
Target:  5'- cGGAGCugGUCG-CG-CG-CGUGCUGCGg -3'
miRNA:   3'- uCCUUG--CAGCuGCaGCuGCAUGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.